PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G243200.1 | ||||||||
Common Name | PHAVU_002G243200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27475.9 Da PI: 10.1013 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.8 | 1.9e-30 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ Phvul.002G243200.1 25 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74 79***********************************************8 PP | |||||||
2 | K-box | 112.5 | 4.2e-37 | 91 | 189 | 2 | 100 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 ++ssg s++ea+a+ +qqe+akL+ +i+nLq+ +R+++Ge L++++ k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Phvul.002G243200.1 91 DSSSGGSASEANAQFYQQEAAKLRVQISNLQNHNRQMMGEALSNMNAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKRETDLHNNNQ 181 56778889*********************************************************************************** PP K-box 93 aLrkklee 100 Lr+k++e Phvul.002G243200.1 182 LLRAKMAE 189 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.3E-40 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.969 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.01E-43 | 18 | 87 | No hit | No description |
SuperFamily | SSF55455 | 2.09E-32 | 18 | 90 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-32 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-26 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-32 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-32 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.7E-27 | 100 | 187 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.927 | 103 | 193 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAFPNQSVSS VSPERKTGRG KIEIKRIENT TSRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSNRGRL YEYANNSVKA SIERYKKASS DSSSGGSASE ANAQFYQQEA AKLRVQISNL 120 QNHNRQMMGE ALSNMNAKDL KNLETKLEKG ISRIRSKKNE LLFAEIEYMQ KRETDLHNNN 180 QLLRAKMAER ERGEHNVNVL SGSTSYESMQ SQFDSRGFFQ VTGLQPNNNQ YAGQDHMSLQ 240 FV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-19 | 18 | 94 | 2 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-19 | 18 | 94 | 2 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-19 | 18 | 94 | 2 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-19 | 18 | 94 | 2 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-19 | 18 | 94 | 2 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-19 | 18 | 94 | 2 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-19 | 18 | 94 | 2 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-19 | 18 | 94 | 2 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-19 | 18 | 94 | 2 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-19 | 18 | 94 | 2 | 78 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G243200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093434 | 0.0 | BT093434.1 Soybean clone JCVI-FLGm-14I9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159503.1 | 1e-179 | hypothetical protein PHAVU_002G243200g | ||||
Swissprot | Q43585 | 1e-121 | AG_TOBAC; Floral homeotic protein AGAMOUS | ||||
TrEMBL | V7CMQ9 | 1e-178 | V7CMQ9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159503.1 | 1e-178 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF684 | 29 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-111 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G243200.1 |
Entrez Gene | 18638974 |
Publications ? help Back to Top | |||
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