PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G239100.1 | ||||||||
Common Name | PHAVU_002G239100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | G2-like | ||||||||
Protein Properties | Length: 391aa MW: 44722.7 Da PI: 9.1636 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.3 | 1.2e-31 | 82 | 135 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+ Phvul.002G239100.1 82 PRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 135 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.218 | 78 | 138 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-30 | 78 | 136 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.24E-15 | 80 | 136 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-22 | 82 | 137 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.9E-9 | 83 | 134 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MSDEYDMSDE QVDDSSMGSS QKCSSFDLNE EASSENNSNA NDKIYEEAKD EGTSTNKSSS 60 ITREGNNERR GGVRQYVRSK MPRLRWTPEL HLSFVHAVER LGGQERATPK LVLQLMNVRG 120 LSIAHVKSHL QMYRSKKLDE AGQVLSETYK STHELGRISH MTHPRQHFKM GNGGIILASD 180 YSEHSYFHGL LHPSTLSHPH SKAIDSRHQK WYFNNHQPFR KPSYSSNEVA SAALQPQARS 240 MSSNQMDATS IVPMRPSQFL EGKRWPPLEI MNNHPWKKRL PSNTESQSVL LHQFGTTTPA 300 SLRPSDLNFA NKTRIREHIS NSDEHRSYSN SSKLEFEPPF RIKSNQEKMQ KEKQWMPDLR 360 LSLSQRDGNN DEKTDHCRET QEINTKLSLS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-17 | 83 | 137 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-17 | 83 | 137 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-17 | 83 | 137 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 83 | 137 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 83 | 137 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 83 | 137 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-17 | 83 | 137 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-17 | 83 | 137 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-17 | 83 | 137 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-17 | 83 | 137 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-17 | 83 | 137 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-17 | 83 | 137 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G239100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-134 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159455.1 | 0.0 | hypothetical protein PHAVU_002G239100g | ||||
Refseq | XP_007159456.1 | 0.0 | hypothetical protein PHAVU_002G239100g | ||||
TrEMBL | V7CQC1 | 0.0 | V7CQC1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159455.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3012 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 8e-37 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G239100.1 |
Entrez Gene | 18638933 |