PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G237300.1 | ||||||||
Common Name | PHAVU_002G237300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 27875.3 Da PI: 8.3028 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53 | 8.8e-17 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr++ +g+W+AeI+d s k+ r +lg++ taeeAa+a+++a+ l+g Phvul.002G237300.1 26 KFVGVRQRA-SGKWAAEIKDTS---KKIRMWLGTYQTAEEAARAYDEAACLLRG 75 799***999.7*********42...36**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-11 | 26 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-19 | 26 | 84 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.7E-34 | 26 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-27 | 26 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.44 | 26 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.56E-31 | 26 | 82 | No hit | No description |
PRINTS | PR00367 | 4.9E-7 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-7 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGVEDQKQRA KDERLCEKVK MKNKRKFVGV RQRASGKWAA EIKDTSKKIR MWLGTYQTAE 60 EAARAYDEAA CLLRGSNTRT NFSTQSSTTI STNSPISLKL TNLLHRKAMS NQTQLQNHPS 120 AITPTFQGAT APNNIMVMEQ TSASSGQAQS LFVVQNQVSN NLYGLDMNMI DCAMGITQNA 180 SQLHFSWPLA QQRINELPLS KDGFNLEGQL SDSVYATNEY HHLEDTYEYK YEYDVNYPLS 240 HFFCFT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-13 | 26 | 82 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. May act as transcriptional repressor of NF-responsive box-containing target gene promoters in root hairs. {ECO:0000269|PubMed:17827349}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G237300.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-180 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159432.1 | 0.0 | hypothetical protein PHAVU_002G237300g | ||||
Swissprot | A9Y0K9 | 1e-96 | ERN3_MEDTR; Ethylene-responsive transcription factor ERN3 | ||||
TrEMBL | V7CR64 | 0.0 | V7CR64_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159432.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15646 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-24 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G237300.1 |
Entrez Gene | 18638915 |
Publications ? help Back to Top | |||
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