PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G233600.1
Common NamePHAVU_002G233600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 909aa    MW: 100797 Da    PI: 6.654
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G233600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.81.2e-24127228199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Phvul.002G233600.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfpaldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 214
                         99*****************************8544444..48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Phvul.002G233600.1 215 -WNEKNQLLLGIRRA 228
                         .8899999****997 PP
2Auxin_resp118.94.1e-39253336183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+s  rr++Gt++g+sdldp+rWpnS+Wrs+k
  Phvul.002G233600.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESGVRRYMGTITGISDLDPTRWPNSHWRSVK 336
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100175.18E-22126227No hitNo description
SMARTSM010191.3E-24127229IPR003340B3 DNA binding domain
PfamPF023623.5E-23127228IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14127229IPR003340B3 DNA binding domain
PfamPF065075.2E-34253336IPR010525Auxin response factor
PfamPF023093.2E-7769860IPR033389AUX/IAA domain
SuperFamilySSF542775.1E-6774850No hitNo description
PROSITE profilePS5174523.218775859IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MRLSSAGFSP PPQEGERRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE  60
IDAHIPNYPS LPPQLICQLH NMTMHADAET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPALDFSQ QPPAQELIAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESGVR RYMGTITGIS DLDPTRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSFHGMKDD DFGLNSSLLW LRDSDRGLQS PTFQGIGVNP  420
WMQPRFDPSM LNMQTDMYQA AAAAAAVQEM RGLDPSKQHS ASILQFQQPQ NFPNRTAAFV  480
QAQMLQQTQH QQIFGNNQEN PHSPQSHLQT QAHLQQQLQH QHSFNSQNHH QHQQQQLRQT  540
QQQQQQQQVV DNQQISSAVS SMSQFVSAPP PQSPPMQAIS SLCQQQNFSD GNSVPTIVSP  600
LHSILGSFPQ DETSHLLNLP RTSSWIPVQN SSGWPSKRVA VDPLISSGVS QCVLPPVEQL  660
GQPQSTVSQN AITLPPFPGR ECSIDQEGSN DPQNHLLFGV NIDPSSLLMP NGMSNLKGVS  720
SNNDSSTLPY QSSNYLNTTT GTDSSLNHGI TPSIGGESGY LQSPENAGQG NPLNKTFVKV  780
YKSGSFGRSL DITKFSSYHE LRSELAQMFG LEGELEDPVR SGWQLVFVDR ENDVLLLGDG  840
PWPEFVNSVW CIKILSPQEV QQMGNPGLEL LNSVPIQRLS NGICDDYVSR QDPRNISPGI  900
TAVGSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1611335743388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G233600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159383.10.0hypothetical protein PHAVU_002G233600g
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLV7CMF50.0V7CMF5_PHAVU; Auxin response factor
STRINGXP_007159383.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]