PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G232200.2

Common Name

PHAVU_002G232200g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

HB-other

Protein Properties

Length: 1790aa MW: 200783 Da PI: 5.2288

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G232200.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	49	104	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ ++yps+++r eL++klgL++rq ++WF+ rR k+kk Phvul.002G232200.2 49 PKRQMKTPFQLETLEKAYAVDNYPSETMRGELSEKLGLSDRQLQMWFCHRRLKDKK 104 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.8E-19	28	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.84E-17	33	104	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.649	45	105	IPR001356	Homeobox domain
SMART	SM00389	5.6E-18	47	109	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-16	49	104	IPR001356	Homeobox domain
CDD	cd00086	3.64E-14	50	104	No hit	No description
PROSITE profile	PS50827	16.1	558	617	IPR018501	DDT domain
SMART	SM00571	4.5E-20	558	617	IPR018501	DDT domain
Pfam	PF02791	3.3E-16	560	614	IPR018501	DDT domain
Pfam	PF05066	2.7E-16	740	808	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	6.3E-9	946	988	IPR028942	WHIM1 domain
Pfam	PF15613	3.5E-11	1122	1194	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1790 aa Download sequence Send to blast
MEEEGYSEGD NNRKRGGTDD DSNENNNNNN TNHGSSSKIV NSNEGQSKPK RQMKTPFQLE 60 TLEKAYAVDN YPSETMRGEL SEKLGLSDRQ LQMWFCHRRL KDKKDLTSKK LPRKVVVEPL 120 PESPTDDPML GPQELGNEYG SGSGSGSSPY ARVEPLNIVP RGVPGYYESP RAMMENRAIS 180 CVEAQLGEPL REDGPILGVE FDPLPPDAFG APIVTEQQKL PTFAYESKIY ERHDVRANKA 240 MTRTFRDYRS LPSQSGTRSD TSGPFSKSHL HDPIEGPARN PHLALGNETI PRIRAGQGQF 300 RGRLLSQQDK QLIPNQSPTR DDNAAPIREV DPTILNVGTS SHFTDHQIVV PENLHSQPSG 360 QVLHNNNATR IEKKRKSDDV RDGEAHEMKI RKEIEKQDNL RRKNEERMRK EIEKQDRERK 420 KEEERLMRER QREEERARRE QKRELERREK FLLKENLRVE KMKIREELRR EKEAERRKAA 480 LEKATARRIA KESMELIEDE QLEMMELAAS SKGFSSIIHL DFDTLQHVES FRDSLCVFPP 540 KSVKLKKPFA IKPWMNSEKN VGNLLMVWRF LITFADVLEL WSFTLDEFVQ AFHDYDSRLL 600 GEIHVALLKV VIKDIEDVAR TPSTGLGMNQ NGAANSGGGH PEIVEGAYAW GFDIRNWHKH 660 LNLLTWPEIF RQLALSAGYG PQLKKRSTTC SYANNKDEGR SCEDIISKLR NGSAAENAVT 720 KMHERGLLAP RRSRHRLTPG TVKFAAFHVL SLEGDKGLTV LELAEKIQKS GLRDLTTSKT 780 PEASISVALT RDTKLFERIA PSTYCVRQAF RKNPADAESI LSDARKKIQI FENGFLAEED 840 TDDVEREESE SDEVDEDPEV DDLVNSSSAN KTSGPCDDFS SNGKENLGHD VGLQGEFDKD 900 LPRFPESGSK KIDTPIAVTG KPGACEDLNV GNLGEDNMEI DESKPGESWV QGLAEGEFSD 960 LSVEERLNAL VVLVGVANEG NSIRVVLEDR LEAANALKKQ MWAEAQLDKF RLKDDIFSKS 1020 DFPSINGNKV EIQHSCSAME GNQSPSLLGN NCNNVPSPGT AENQKAAPGV QSMSIEKHSS 1080 VQDLCTGPDN PQIQTFAQYS KRSRSQLKSY IFHIAEEMCA YRSLTLGQDR RRNRYWQFVA 1140 SASSNDPGSG RIFVEFLDGN WRLIDTEEAF DALLISLDSR GVRESHLRLM LQKVESSFKE 1200 NVRKNTQCSR VGSRGETCVK NEADETDSSP DRHTGSDSPS STLCGLNSDS LETSSSFKIE 1260 LGKSESDKKS ALRRYQDFQK WTWKECYNSS ILCAMKYGKK RGKSQVVVCD ICLNPYFFED 1320 SHCNCCHRTF PSNNGFNFSK HAFQCGEKLS KDICVLDSNL PLRTRLLKAL LAHIEVSIPP 1380 EAFQSNWIED IRRHWSVKLS KSSSVEELLQ ILALLERALK RDFLSSTFST TGEQLGLNTM 1440 SENVAQTSAD SESVAVLPWV PLTTSAVSLR LFEFDESIVY LLHEKPEPSE EKEDRQYIKL 1500 PSRYNASKSI KVVETADLDC DEFMKVKSNP AKVVQNNNKR GRGSSVKGRV KNISKTKRNN 1560 GRRRSAKVAG NLNQRVKQQG GGSQGQASGR GRRTIRKRRV GKKAVEDLLL GHRGASHSSN 1620 IAKESLRSLD EEWDDEKGSP MTPIHMGTAN ISNSTEEAES DDNVQAMESD DNVQAVESDD 1680 NGQAVESDDN GQAVESDDNG QAVEYDKGNW EIGFNGNPSR WREDMVGMSD EDVEASEDEN 1740 QNENGIEENE EEDSDADADV MSEEGSDGTA NRIVNEESSD SDVSEDSSD*

Sequence ? help Back to Top

Protein Sequence Length: 1790 aa Download sequence Send to blast

MEEEGYSEGD NNRKRGGTDD DSNENNNNNN TNHGSSSKIV NSNEGQSKPK RQMKTPFQLE  60
TLEKAYAVDN YPSETMRGEL SEKLGLSDRQ LQMWFCHRRL KDKKDLTSKK LPRKVVVEPL  120
PESPTDDPML GPQELGNEYG SGSGSGSSPY ARVEPLNIVP RGVPGYYESP RAMMENRAIS  180
CVEAQLGEPL REDGPILGVE FDPLPPDAFG APIVTEQQKL PTFAYESKIY ERHDVRANKA  240
MTRTFRDYRS LPSQSGTRSD TSGPFSKSHL HDPIEGPARN PHLALGNETI PRIRAGQGQF  300
RGRLLSQQDK QLIPNQSPTR DDNAAPIREV DPTILNVGTS SHFTDHQIVV PENLHSQPSG  360
QVLHNNNATR IEKKRKSDDV RDGEAHEMKI RKEIEKQDNL RRKNEERMRK EIEKQDRERK  420
KEEERLMRER QREEERARRE QKRELERREK FLLKENLRVE KMKIREELRR EKEAERRKAA  480
LEKATARRIA KESMELIEDE QLEMMELAAS SKGFSSIIHL DFDTLQHVES FRDSLCVFPP  540
KSVKLKKPFA IKPWMNSEKN VGNLLMVWRF LITFADVLEL WSFTLDEFVQ AFHDYDSRLL  600
GEIHVALLKV VIKDIEDVAR TPSTGLGMNQ NGAANSGGGH PEIVEGAYAW GFDIRNWHKH  660
LNLLTWPEIF RQLALSAGYG PQLKKRSTTC SYANNKDEGR SCEDIISKLR NGSAAENAVT  720
KMHERGLLAP RRSRHRLTPG TVKFAAFHVL SLEGDKGLTV LELAEKIQKS GLRDLTTSKT  780
PEASISVALT RDTKLFERIA PSTYCVRQAF RKNPADAESI LSDARKKIQI FENGFLAEED  840
TDDVEREESE SDEVDEDPEV DDLVNSSSAN KTSGPCDDFS SNGKENLGHD VGLQGEFDKD  900
LPRFPESGSK KIDTPIAVTG KPGACEDLNV GNLGEDNMEI DESKPGESWV QGLAEGEFSD  960
LSVEERLNAL VVLVGVANEG NSIRVVLEDR LEAANALKKQ MWAEAQLDKF RLKDDIFSKS  1020
DFPSINGNKV EIQHSCSAME GNQSPSLLGN NCNNVPSPGT AENQKAAPGV QSMSIEKHSS  1080
VQDLCTGPDN PQIQTFAQYS KRSRSQLKSY IFHIAEEMCA YRSLTLGQDR RRNRYWQFVA  1140
SASSNDPGSG RIFVEFLDGN WRLIDTEEAF DALLISLDSR GVRESHLRLM LQKVESSFKE  1200
NVRKNTQCSR VGSRGETCVK NEADETDSSP DRHTGSDSPS STLCGLNSDS LETSSSFKIE  1260
LGKSESDKKS ALRRYQDFQK WTWKECYNSS ILCAMKYGKK RGKSQVVVCD ICLNPYFFED  1320
SHCNCCHRTF PSNNGFNFSK HAFQCGEKLS KDICVLDSNL PLRTRLLKAL LAHIEVSIPP  1380
EAFQSNWIED IRRHWSVKLS KSSSVEELLQ ILALLERALK RDFLSSTFST TGEQLGLNTM  1440
SENVAQTSAD SESVAVLPWV PLTTSAVSLR LFEFDESIVY LLHEKPEPSE EKEDRQYIKL  1500
PSRYNASKSI KVVETADLDC DEFMKVKSNP AKVVQNNNKR GRGSSVKGRV KNISKTKRNN  1560
GRRRSAKVAG NLNQRVKQQG GGSQGQASGR GRRTIRKRRV GKKAVEDLLL GHRGASHSSN  1620
IAKESLRSLD EEWDDEKGSP MTPIHMGTAN ISNSTEEAES DDNVQAMESD DNVQAVESDD  1680
NGQAVESDDN GQAVESDDNG QAVEYDKGNW EIGFNGNPSR WREDMVGMSD EDVEASEDEN  1740
QNENGIEENE EEDSDADADV MSEEGSDGTA NRIVNEESSD SDVSEDSSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	104	RRLKDKKD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G232200.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007159366.1	0.0	hypothetical protein PHAVU_002G232200g
TrEMBL	V7CQ34	0.0	V7CQ34_PHAVU; Uncharacterized protein
STRING	XP_007159367.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	Phvul.002G232200.2
Entrez Gene	18638864