PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G230300.1 | ||||||||
Common Name | PHAVU_002G230300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | SBP | ||||||||
Protein Properties | Length: 225aa MW: 26235 Da PI: 5.6812 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 74.8 | 1.5e-23 | 119 | 166 | 2 | 49 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 Cqv++C+adlseak+yhrrhkvCe h+k +vl++gl+qrfCqqCsr Phvul.002G230300.1 119 CQVDNCDADLSEAKQYHRRHKVCEYHAKVHSVLMAGLQQRFCQQCSRL 166 ***********************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.6E-25 | 112 | 166 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 18.64 | 116 | 195 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-22 | 117 | 169 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.3E-18 | 119 | 166 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
METKRRPYVV LTNFSHILFT LLVFTIYIKY LWSSLPYVTP ESFFLTTFFW ISEEFMDASR 60 SEGKRVLRYN EEEEEDEEEE EEEEVETGFG EEGRRNKRVM TDLYGKKGSK AGGSMPPSCQ 120 VDNCDADLSE AKQYHRRHKV CEYHAKVHSV LMAGLQQRFC QQCSRLIFAV TCLREKDSMS 180 CLNLMNQKGV VEHDWLAIMR GVAKMQLIVV ENNFFYVTMN INKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-19 | 111 | 166 | 3 | 58 | squamosa promoter binding protein-like 4 |
1wj0_A | 2e-19 | 119 | 166 | 6 | 53 | squamosa promoter-binding protein-like 12 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G230300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159344.1 | 1e-169 | hypothetical protein PHAVU_002G230300g | ||||
TrEMBL | V7CPQ3 | 1e-168 | V7CPQ3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159344.1 | 1e-169 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22691 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.2 | 1e-21 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G230300.1 |
Entrez Gene | 18638845 |