PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G230100.1 | ||||||||
Common Name | PHAVU_002G230100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | Dof | ||||||||
Protein Properties | Length: 262aa MW: 27963.3 Da PI: 10.1343 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.2 | 3.3e-37 | 21 | 79 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + + kcprCdstntkfCy+nnyslsqPr+fCk+C+ryWt+GG++rn+PvGg++rk k+ Phvul.002G230100.1 21 KPQHKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCKRYWTHGGTFRNIPVGGASRKAKRG 79 6789***************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-24 | 14 | 78 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.2E-32 | 23 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.127 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MEQEEGREEN TKIQLAVAAP KPQHKCPRCD STNTKFCYFN NYSLSQPRHF CKTCKRYWTH 60 GGTFRNIPVG GASRKAKRGK TDSSSPSHSL TQPLSNLMKP SPLTMLHSTS PYYHQLGGGG 120 GGGRGYLSSL ATLHSQSLNV AGSPSSLPLL SGFNAASSFP LRFHHMGTRE RVESLYPAPQ 180 RLLASNMASG TAASPSAHCP QSLINNVSST NLTAGSDASL WSATINATSI GGNSDQNNVK 240 GGPSSLIPNH WLHLSGYRPP Q* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G230100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 7e-93 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007159342.1 | 0.0 | hypothetical protein PHAVU_002G230100g | ||||
TrEMBL | V7CQX8 | 0.0 | V7CQX8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007159342.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4145 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 8e-33 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G230100.1 |
Entrez Gene | 18638843 |