PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G186300.1
Common NamePHAVU_002G186300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 707aa    MW: 78679.7 Da    PI: 5.3438
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G186300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.7e-06122143527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         +C ff++ G C  GdrC F+Hgp
  Phvul.002G186300.1 122 PCFFFQK-GLCLKGDRCAFMHGP 143
                         6777777.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.6062453IPR000571Zinc finger, CCCH-type
PfamPF156633.5E-122579No hitNo description
SMARTSM003560.0022552IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.7795581IPR000571Zinc finger, CCCH-type
SMARTSM003560.00595780IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.206117144IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6117143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6118142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-4122143IPR000571Zinc finger, CCCH-type
PfamPF146081.2122142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MVTPQPQLQV QPPQPAPSSQ DEALKRNTDC VYFLASPLTC KKGNECEYRH SEYARVNPRD  60
CRYWLSGNCL NPKCSFRHPP LDGLLGTQAA TAGGPSVSAP QSQIPTASAT HAPYNSSKQA  120
VPCFFFQKGL CLKGDRCAFM HGPPAPSTGN KVAAQVPVTS QGAENPSFKK PFGTNDKYTQ  180
ERKTSHGNVA KSGGGPELKP APKIESAPKR NMFELEKEMP PPTVGFDNET SRFKTSSPPV  240
TNGPTVVRSN RLHQARVPDD HNFHSGKDSD EFLRESSPGF DVLVADELRN SDYYHGEDEF  300
GKARGQDERN LDSLNEYDLG HSGDYGLAAD IDRERFRVPQ GYESYDHMQE PYVWEQHRKA  360
SAHLDRRTRR RSDSPENAEV SDLRHHLSKR RKGNGLKSVV SHDYALEGHG EEQSHRSFPR  420
KDSLPLNESS LGNRFRGRIK IPANGGTDQL ERDDRGRNRG RLLSGRLQAT QQGRIHDRMR  480
GRLQDDERRN SKDRLMGREL IGGDWSDFAG PKSLSELKNG RNTENRELQP LGKRGTLRDD  540
HPLSEDDLQF DGPKPLSEIL KEKKRGGAGG RAGADSGNGK SSDIKNEEVT NGLDPTPVTN  600
TQNGVLSETK EYVNNQNNEE SKLEVSDAVG GDTVATDGQY EEGMYDEAGE DQYYEGDEPR  660
EGDYEYEQGD DGYYEYEQGE EGENQEEDYV DEDGDDFAKK IGVIHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G186300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158839.10.0hypothetical protein PHAVU_002G186300g
TrEMBLV7CN930.0V7CN93_PHAVU; Uncharacterized protein
STRINGXP_007158839.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137