PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G184600.1
Common NamePHAVU_002G184600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 293aa    MW: 33534.9 Da    PI: 9.5279
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G184600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.4e-1776123148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+WT +Ed+ l+++++ +G g+W+t a   g++Rt+k+c++rw++yl
  Phvul.002G184600.1  76 RGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYL 123
                         89********************************************97 PP
2Myb_DNA-binding50.74.2e-16129172146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Phvul.002G184600.1 129 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 172
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.32271123IPR017930Myb domain
SuperFamilySSF466891.27E-3073170IPR009057Homeodomain-like
SMARTSM007176.2E-1475125IPR001005SANT/Myb domain
PfamPF002499.5E-1676123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2177130IPR009057Homeodomain-like
CDDcd001671.17E-1078123No hitNo description
PROSITE profilePS5129422.917124178IPR017930Myb domain
SMARTSM007172.9E-14128176IPR001005SANT/Myb domain
PfamPF002496.9E-15129172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-22131177IPR009057Homeodomain-like
CDDcd001674.00E-7149172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MYLKARTPTL LYLTCNNPTQ HNTTPFSLPT YLNLIHTSSP NTPLFFGLRE VVSSMDEKGR  60
RTTNTLLSED EMDLRRGPWT VDEDLTLINY IATHGEGRWN TLALSAGLKR TGKSCRLRWL  120
NYLRPDVRRG NITLEEQLLI LELHSRWGNR WSKIAQYLPG RTDNEIKNYW RTRVQKHAKQ  180
LKCDVNSKQF KDTMRYLWMP RLVERIQAAA TASVTTNKAY TSENNLKNNE IEVHNLKDKM  240
GLIDPSAMNS DFVGSYVMQS HTPENSSTAL SSSDSFGTQV STKSDLTDYY SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-257317024120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor contributing to the regulation of stamen maturation and male fertility in response to jasmonate signaling. Required for correct timing of anther dehiscence. Acts as a negative regulator of abscisic acid-induced cell death. Not involved in the regulation of BOI. Regulated by MYB21 and at a lower level by MYB24. Negatively regulated by the proteasome in an SCF(COI1) E3 ubiquitin-protein ligase complex-dependent manner. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:20921156, ECO:0000269|PubMed:23952703}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G184600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate and pathogen infection. {ECO:0000269|PubMed:14555693, ECO:0000269|PubMed:19091873}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937110.0BT093711.1 Soybean clone JCVI-FLGm-17N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158818.10.0hypothetical protein PHAVU_002G184600g
SwissprotQ9LDE11e-89MY108_ARATH; Transcription factor MYB108
TrEMBLV7CKV20.0V7CKV2_PHAVU; Uncharacterized protein
STRINGXP_007158818.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.18e-92myb domain protein 108
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng HQ, et al.
    The cotton MYB108 forms a positive feedback regulation loop with CML11 and participates in the defense response against Verticillium dahliae infection.
    J. Exp. Bot., 2016. 67(6): p. 1935-50
    [PMID:26873979]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Chou ML, et al.
    The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana.
    Int J Mol Sci, 2018.
    [PMID:29937503]