PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G177600.1
Common NamePHAVU_002G177600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 914aa    MW: 101209 Da    PI: 6.645
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G177600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.31.6e-24127228199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Phvul.002G177600.1 127 FCKILTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 214
                         99*****************************8544444..48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Phvul.002G177600.1 215 -WNEKNQLLLGIRRA 228
                         .8899999****997 PP
2Auxin_resp1187.5e-39253336183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+s  rr++Gt++g+sdld+vrWpnS+Wrs+k
  Phvul.002G177600.1 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESGVRRYMGTITGISDLDSVRWPNSHWRSVK 336
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-42120242IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-22126227No hitNo description
SMARTSM010192.4E-25127229IPR003340B3 DNA binding domain
PfamPF023624.2E-23127228IPR003340B3 DNA binding domain
PROSITE profilePS5086313.253127229IPR003340B3 DNA binding domain
PfamPF065074.7E-34253336IPR010525Auxin response factor
PfamPF023099.0E-6777865IPR033389AUX/IAA domain
SuperFamilySSF542774.19E-6778856No hitNo description
PROSITE profilePS5174522.327780864IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MKLSSAGFST PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNRE  60
VDGHIPNYPS LPPQLICQLH NVTMHADTET DEVYAQMTLQ PLSPQEQKEA YLPAELGTPS  120
KQPTNYFCKI LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQPVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESGVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSFHAGMKD DDFGINSSLM WLRDTERGLP SLNFPGVGVS  420
PWMQPRLDPS MMNYQTDVYQ AMAAAALQDM WTSDPSKQHP TSLLQFQQPQ NFLNRSSPLV  480
QTQILQQSQS QQSFPNSQEI PHPSQSQAQT HFQQHLQHQH SFNNQNQHHL LQQQQQQQQS  540
QQPQQQQQQL QQQQVVDHQQ ISNAVSTMSQ FVSAPQSQSP PMQAISSLGH QQSFSDSNGN  600
PVTNAIVSPL HSILGSFSQD ETSHLLNLPR TSWVPVQPST AWPPSKRVAV DPLFSSGASQ  660
CVLPQVEQLG QPQSTMAQNA ITLPPFPSRE CAIEGSTDPQ NHLLFGVNIE PSSLLMHNGL  720
SSLKGVSSNS GPPTIPFQSS NYLNTTGTDS SMNPGMTHNI GEAGFLQTPE NGGQGNPSIK  780
TFVKVYKSGS FGRSLDITKF TNYHELRGEL ARMFGLEGEL EDPVRSGWQL VFVDQENDVL  840
LLGDGPWPEF VNSVGCIKIL SPQEVQQMGN NGLELLNSVP IQRLSSGVCD DYAGHEDPRS  900
ISTGITTVGS LNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601335743388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G177600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158734.10.0hypothetical protein PHAVU_002G177600g
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLV7CN100.0V7CN10_PHAVU; Auxin response factor
STRINGXP_007158734.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]