PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G171000.1 | ||||||||
Common Name | PHAVU_002G171000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 368aa MW: 39862.9 Da PI: 8.0813 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 109 | 2.5e-34 | 60 | 118 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 v+YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRr+++e+ Phvul.002G171000.1 60 VVTYKECLKNHAASLGGHALDGCGEFMPSSSTNpTDPRSLKCAACGCHRNFHRRDPQEH 118 689**************************99999********************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 6.8E-29 | 61 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-23 | 61 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.3E-32 | 62 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.822 | 63 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 227 | 293 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.86E-18 | 227 | 293 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.9E-26 | 232 | 289 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MDLTSSSTHT VQTLDADTRI TPPINPTNNT TPKSLSFTNG TPKRHPTTIG APLPLPPPMV 60 VTYKECLKNH AASLGGHALD GCGEFMPSSS TNPTDPRSLK CAACGCHRNF HRRDPQEHNN 120 LNYNIHSTNT AAAANNNPTF LSCIYTPSAP APISQRAMSQ STSPSLSSSP SHSPSPMSSP 180 SPPPLSHVPP YHASAPHMLL ALGTGYSTPS DEHHHHRGLT FSSVMLKSEN PKKRYRTKFS 240 KEQKEKMHSF SEKLGWRMQK GDDGLVQQFC NDIGVSRGVF KVWMHNNKNT LRRRLDQGEN 300 ANPNANANSS QSVGDHDDGN NTSGGGGFDS DINNPYNPNS NNNNDIHMNE EDDGCRNVHV 360 SLNGLSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-22 | 233 | 290 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G171000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007158652.1 | 0.0 | hypothetical protein PHAVU_002G171000g | ||||
TrEMBL | V7CP24 | 0.0 | V7CP24_PHAVU; Uncharacterized protein | ||||
STRING | XP_007158652.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 4e-57 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G171000.1 |
Entrez Gene | 18638231 |