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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Phvul.002G170700.1 | ||||||||
| Common Name | PHAVU_002G170700g | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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| Family | G2-like | ||||||||
| Protein Properties | Length: 342aa MW: 37911.7 Da PI: 6.8421 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 99.8 | 1.8e-31 | 20 | 74 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kprl+WtpeLH+rF ea++qLGG+ekAtPk+++++m+++gLtl+h+kSHLQkYRl
Phvul.002G170700.1 20 KPRLKWTPELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 74
79****************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 1.2E-29 | 18 | 74 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 4.48E-16 | 19 | 75 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 4.1E-22 | 20 | 75 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 8.8E-8 | 22 | 73 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 5.9E-23 | 118 | 164 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 342 aa Download sequence Send to blast |
MDLQNVQTQS MRLVLSTDAK PRLKWTPELH QRFTEAINQL GGAEKATPKS LMRVMGIPGL 60 TLYHLKSHLQ KYRLGKSPPL ETCSDNNQQG FSEIQSSDGH CSPEISTGTQ NQMNENLKIA 120 EALQMQMEVQ RKLYEQIEVQ RHLQLRIEAQ GKYLQSVLSK AHETLARYSS STTGIELAKS 180 ELSQLVSIMN NACPTSPISE LTETRGLSLS CGERKQDRGT MCSLESSLTS SESSGRTEER 240 QPVDEAEKPQ KTKGISVELP LMEIHSEGKK FKGDTSEGRK RSAATDSNGC CVDQPCGKGC 300 GNKLRKCELS EMLDLNSQYQ RDTDSSVKEI DLNCSSSFWG Q* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 1e-20 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 1e-20 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 1e-20 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 1e-20 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 1e-20 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 1e-20 | 20 | 76 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 1e-20 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 1e-20 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 1e-20 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 1e-20 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 1e-20 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 1e-20 | 19 | 76 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Phvul.002G170700.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BT098169 | 0.0 | BT098169.1 Soybean clone JCVI-FLGm-12I23 unknown mRNA. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_007158649.1 | 0.0 | hypothetical protein PHAVU_002G170700g | ||||
| Swissprot | F4I274 | 1e-78 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
| TrEMBL | V7CMT0 | 0.0 | V7CMT0_PHAVU; Uncharacterized protein | ||||
| STRING | XP_007158649.1 | 0.0 | (Phaseolus vulgaris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF5218 | 32 | 53 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69580.1 | 7e-80 | G2-like family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Phvul.002G170700.1 |
| Entrez Gene | 18638228 |
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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