PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.002G170400.1

Common Name

PHAVU_002G170400g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

M-type_MADS

Protein Properties

Length: 359aa MW: 40538.7 Da PI: 8.5783

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G170400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.2	1.4e-20	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR+ngi+KKA ELS+LCd+++ +++f+++gk Phvul.002G170400.1 9 KRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGK 53 689****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-27	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.507	1	53	IPR002100	Transcription factor, MADS-box
CDD	cd00120	5.81E-24	2	56	No hit	No description
SuperFamily	SSF55455	3.14E-24	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.4E-18	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KAAELSILCD IDIILLMFAP NGKPSVCRGR 60 RSNLEEVIAK FAQLTPQERA KRKLETLEAL KKTFKKLDHD VNIQEFLGTS SQTIEDLSNQ 120 ARLLQSQISE THKRLSYWTE FDKITNVEQL GQMENSLRES LNQIRTRKEN IKKQQLVSLQ 180 CNNQFNEMNI PFRMSAEQHL QPLSWIANGD SQNIVLPEDS SMFIHKDVEG SASSSFGSYA 240 SYLGSSMKNE MSNSAQENGV LSDMSSTANM RLQLNGQFPY LPYNFNLLNN LKFQPTAEIN 300 PHENPVDYQV NGSLEAPRSG YDSNHHGWAS TSGHCGVTMF DEQLYAQASS TKIHFGFT*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KAAELSILCD IDIILLMFAP NGKPSVCRGR  60
RSNLEEVIAK FAQLTPQERA KRKLETLEAL KKTFKKLDHD VNIQEFLGTS SQTIEDLSNQ  120
ARLLQSQISE THKRLSYWTE FDKITNVEQL GQMENSLRES LNQIRTRKEN IKKQQLVSLQ  180
CNNQFNEMNI PFRMSAEQHL QPLSWIANGD SQNIVLPEDS SMFIHKDVEG SASSSFGSYA  240
SYLGSSMKNE MSNSAQENGV LSDMSSTANM RLQLNGQFPY LPYNFNLLNN LKFQPTAEIN  300
PHENPVDYQV NGSLEAPRSG YDSNHHGWAS TSGHCGVTMF DEQLYAQASS TKIHFGFT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-12	1	92	1	90	MEF2 CHIMERA
6byy_B	1e-12	1	92	1	90	MEF2 CHIMERA
6byy_C	1e-12	1	92	1	90	MEF2 CHIMERA
6byy_D	1e-12	1	92	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G170400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007158646.1	0.0	hypothetical protein PHAVU_002G170400g
Swissprot	Q1PFA4	1e-109	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	V7CN29	0.0	V7CN29_PHAVU; Uncharacterized protein
STRING	XP_007158646.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	3e-86	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	Phvul.002G170400.1
Entrez Gene	18638225

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]