PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G170000.1
Common NamePHAVU_002G170000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 400aa    MW: 44503.3 Da    PI: 6.4225
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G170000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l  +++++G g+W++ +++ g+ R++k+c++rw +yl
  Phvul.002G170000.1 14 KGPWTPEEDKKLMAYIEEFGHGSWRALPSKAGLQRCGKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding513.3e-1667112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+++ +E++ +++++++lG++ W++Ia+ ++ +Rt++++k++w+++l
  Phvul.002G170000.1  67 RGKFSLQEEQTIIQLHALLGNR-WSAIAAQLP-KRTDNEIKNYWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.306961IPR017930Myb domain
SuperFamilySSF466895.99E-3011108IPR009057Homeodomain-like
SMARTSM007177.7E-131363IPR001005SANT/Myb domain
PfamPF002491.7E-151461IPR001005SANT/Myb domain
CDDcd001671.24E-101661No hitNo description
PROSITE profilePS5129425.2962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-2665116IPR009057Homeodomain-like
SMARTSM007174.9E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1567112IPR001005SANT/Myb domain
CDDcd001672.21E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGRSPCCEKV GLKKGPWTPE EDKKLMAYIE EFGHGSWRAL PSKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIAAQLPKRT DNEIKNYWNT HLKKRLTRMG  120
IDPTTHKPKT DALGGSGGCQ SKDAANLSHM AQWESARLEA EARLVRESKL QVQNNLGSCS  180
NPQPARLVLN KITTQQPSLP PCLDILKAWQ SSWSKPQPPT KESNPKMMHS MYAMMLSTED  240
TLESPTSTLC FPGTTSTMLP VSNNNNIGVL FNENNNNDMF PLSSTNMESG FMKENTVLHL  300
QDDDIMAAVE AFRATTTVYD SNHNVVPPTL PNGGVLEGLN DDEGLVYESN DNLGVEEENM  360
AMMNGDGSLC NVNLEENNKH YWNNIFNLVN DPLSGSSVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G170000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158642.10.0hypothetical protein PHAVU_002G170000g
TrEMBLV7CP150.0V7CP15_PHAVU; Uncharacterized protein
STRINGXP_007158642.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-104myb domain protein 106