PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G168900.1
Common NamePHAVU_002G168900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 343aa    MW: 38663.8 Da    PI: 4.7531
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G168900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.6e-184796255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y GVr+++ +grWvAeI+d      ++ r +lg+++ ae+Aa+a++aa++ l+g
  Phvul.002G168900.1 47 RYIGVRQRP-SGRWVAEIKDtI----QNIRLWLGTYDNAEDAARAYDAAARLLRG 96
                        799******.7*********33....35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.17E-1546103No hitNo description
PROSITE profilePS5103219.55947104IPR001471AP2/ERF domain
SMARTSM003803.4E-3147110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-2647103IPR001471AP2/ERF domain
PfamPF008478.8E-124796IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-1947104IPR016177DNA-binding domain
PRINTSPR003676.3E-74859IPR001471AP2/ERF domain
PRINTSPR003676.3E-77086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MANKRKRWEC EGGEKNSEEG NTEWEKLREE AASMAAAILR ARRANKRYIG VRQRPSGRWV  60
AEIKDTIQNI RLWLGTYDNA EDAARAYDAA ARLLRGANTR TNFFPSQYSP SVSALPPKIA  120
KLLLVRLKAR NFASSCRVTS PLPSNHYDQE TKVEPQPEPE HESQPEPEPI LYLQTEEPHY  180
GNFVDMKGNG IVEESYYGAS YGSYDITTCD HSCGTHEETS NQKCSGEDFS FGYNFGDHVY  240
DENKHIVSGK GELEACDFQF LDCAGSLSYS FSPFEIAEEM VGAIEEYSYY DVDDSSLGRE  300
TFRMKYERKF SACLYTLTGV SECLRLQVGP ENGKEFEGFL GC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G168900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158631.10.0hypothetical protein PHAVU_002G168900g
TrEMBLV7CMZ60.0V7CMZ6_PHAVU; Uncharacterized protein
STRINGXP_007158631.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-15related to AP2 11