PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G166700.1
Common NamePHAVU_002G166700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SRS
Protein Properties Length: 321aa    MW: 34755.1 Da    PI: 6.6631
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G166700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702226.93.7e-701082592153
              DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 
                         +sg++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa++rrerqqql++++++ ++s +  + +r+r++++ ++s+l++t+l+
  Phvul.002G166700.1 108 GSGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERQQQLSTLQQNIESSGELPKRQRERDHNNPTSSSLACTRLP 198
                         57899*****************************************************999999999999999999999999********* PP

              DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                         s+ s++ le  ++P+ v+s+a frcvrvss+d+++ee+aY tav+igGhvfkGiLyd+G+e
  Phvul.002G166700.1 199 SNPSSSGLEEVNFPAVVRSSAEFRCVRVSSMDEADEEYAYSTAVNIGGHVFKGILYDYGPE 259
                         ***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-64111259IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.5E-28113155IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.7E-24211258IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAGIFSLGGR GNNNEEEIPP PPDTLYWYNN KNDDVSSYHH HRGGGGFELW NQQQQQHFMD  60
QGPPQPRPLF HQDLYSALGV GVGPSRPISD DQSSSRSGFM VGGGSGSGSG GISCQDCGNQ  120
AKKDCPHMRC RTCCKSRGFD CQTHVKSTWV PASRRRERQQ QLSTLQQNIE SSGELPKRQR  180
ERDHNNPTSS SLACTRLPSN PSSSGLEEVN FPAVVRSSAE FRCVRVSSMD EADEEYAYST  240
AVNIGGHVFK GILYDYGPEG NRNYMGGNGE SSSTGVGGLN LTTGAVVSEP LLDPSSSLYP  300
APLNTFMPGS GTQFFPHPRS *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G166700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-165AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158606.10.0hypothetical protein PHAVU_002G166700g
SwissprotQ9SD401e-77SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBLV7CMW60.0V7CMW6_PHAVU; Uncharacterized protein
STRINGXP_007158606.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-77Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]