PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.002G163700.1 | ||||||||
Common Name | PHAVU_002G163700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 323aa MW: 35266.7 Da PI: 8.5452 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 120 | 170 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ rg+WvAeIr p + r r++lg+++tae Aa a+++a+ kl+ge Phvul.002G163700.1 120 LYRGVRQRH-RGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 170 59******9.8*********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.97E-15 | 119 | 179 | No hit | No description |
SMART | SM00380 | 2.5E-34 | 120 | 183 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.379 | 120 | 177 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-29 | 120 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 120 | 177 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.1E-8 | 121 | 132 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.4E-13 | 121 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-8 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 323 aa Download sequence Send to blast |
MDGMQERNSE LGTDIGSSLS NLILTGGSNA LDSIFSNCCP PTNASSSNSV LDHLEPFGCS 60 GFEPLGSSVY LRQRDILQKF YQENRGNGSF LPTSLANPSM NSVYTSSLTS SLTNPCKKKL 120 YRGVRQRHRG KWVAEIRLPQ NRMRVWLGTY DTAEAAAYAY DRAAYKLRGE YARLNFPNLK 180 DPTKLGFGDS ARLNALKSSV DAKIQAICQK VKRERAKKIA AKKLSSATAH ATRKQSEKIN 240 SSASSSSSSL PLSPSSIFCD NWANELFSPS VSEDGIWKGE NSPASVSMEC PTMVTDDTEF 300 EGCSLARLPS FDPELIWEVL AI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-18 | 119 | 177 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-18 | 117 | 177 | 2 | 63 | ATERF1 |
3gcc_A | 3e-18 | 117 | 177 | 2 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.002G163700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007158572.1 | 0.0 | hypothetical protein PHAVU_002G163700g | ||||
Swissprot | Q9C7W2 | 2e-69 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | V7CNR7 | 0.0 | V7CNR7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007158572.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G64380.1 | 4e-59 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.002G163700.1 |
Entrez Gene | 18638157 |
Publications ? help Back to Top | |||
---|---|---|---|
|