PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G162500.1 | ||||||||
Common Name | PHAVU_002G162500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 314aa MW: 35023.9 Da PI: 5.4308 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.5e-20 | 106 | 156 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdps r r +lg+++taeeAa +++a+ kl+g Phvul.002G162500.1 106 KKFRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAALVYDNAAIKLRG 156 59********.**********84....34*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.32E-33 | 106 | 163 | No hit | No description |
PROSITE profile | PS51032 | 23.578 | 107 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-30 | 107 | 163 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-13 | 107 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-21 | 107 | 163 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-36 | 107 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MTTPPTKYTH HTKLLTLSHH PPQNPYPRLV RITVTDADAT DSSSDEEQTF HSSKRLRQRH 60 RKFINEISIE PCAGNNNGVF SRKRVRSRSV VGKDRVAETP RASTVKKFRG VRQRPWGKWA 120 AEIRDPSRRV RLWLGTYDTA EEAALVYDNA AIKLRGPDAL TNFITPPATW HNEDPTPAPN 180 GYASAEETQN KTLFSPTSVL HSCSLSEEAE SIAGKDDDYS SVPESSKAKA ESLFPIPSEL 240 KFDFQDCLAA PEMFGELDSA AAAESVLFSD DDWPGVFLTA CEDLGLKSWH TDRNQEFFQD 300 IDDLFVSDPL LAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-20 | 106 | 163 | 4 | 62 | ATERF1 |
3gcc_A | 5e-20 | 106 | 163 | 4 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G162500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007158558.1 | 0.0 | hypothetical protein PHAVU_002G162500g | ||||
TrEMBL | V7CK28 | 0.0 | V7CK28_PHAVU; Uncharacterized protein | ||||
STRING | XP_007158558.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 1e-42 | cytokinin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G162500.1 |
Entrez Gene | 18638145 |