PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.002G149500.1 | ||||||||
Common Name | PHAVU_002G149500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 401aa MW: 44372 Da PI: 6.8985 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.6e-17 | 48 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Phvul.002G149500.1 48 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 97 59*******.**********93....35999**********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.3E-29 | 48 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-33 | 48 | 111 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-11 | 48 | 97 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-21 | 48 | 105 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.115 | 48 | 105 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.28E-30 | 48 | 104 | No hit | No description |
PRINTS | PR00367 | 2.3E-9 | 49 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 401 aa Download sequence Send to blast |
MEEAMRRLNG VAPILGSDPK ESAVGENPKR STAVNKRTLR EDGSGAMRYR GVRRRPWGRY 60 AAEIRDPQSK ERRWLGTFDT AEEAACAYDC AARAMRGLKA RTNFVYPTSP QASSATTEHF 120 FHSFNNNNFI KHSPSLPFTN HRSRHSTGSA MCFDHPSAVD FSYSNPRNPS STLNMLLLRD 180 LINSSSNNPS LLSSSTHNFH DQFYNKGAST FSSLPTVSSS SSSPLFPSYS VNYPFEGSSS 240 VNVNTLCGTN FTEKGDDDDS GSGFFSRESS DSGLLEEIVN KFLPKTKPSK CESLPKMEVF 300 RNPQESLLPS LISESTLVST VQCSDDTKKG FQKNESFGVS FDHQGFPMQK FDSFNGFDSV 360 QGMALGNEHT MANHAENCIV EDVFQYQELL NSFAIRMQNA * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 40 | 104 | 6 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.002G149500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007158394.1 | 0.0 | hypothetical protein PHAVU_002G149500g | ||||
TrEMBL | V7CLZ5 | 0.0 | V7CLZ5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007158394.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G12980.1 | 4e-14 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.002G149500.1 |
Entrez Gene | 18638013 |