PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G142800.2
Common NamePHAVU_002G142800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 326aa    MW: 36440.2 Da    PI: 4.3924
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G142800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.86.9e-12164207654
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Phvul.002G142800.2 164 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 207
                         589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.491158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-15161220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9164207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-15165220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.56E-5165211No hitNo description
CDDcd048733.93E-4251292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MELSQLGFLD ELLAPRKDTW GALSTGLNEL LPCGWSFDSF DENQGLATLN PSFAAFSTPL  60
DHRFECPYGS EAAYPFVDEF TLPELDSSYT INDESAPLLP KEDNPSLEDE ELGFLGSDNQ  120
SLEQAKNGCK IEEQVTEIPV FNMGLCAEKK LKSKKLEGQP SKNLMAERRR RKRLNDRLSM  180
LRSIVPKISK MDRTSILGDT IDYMKELLER IGKLQEEETE EGTNQINLLG ICKELKPNEV  240
MFDVERREQD TRISICCATK PGLLLSTVNT LEALGLEIHQ CVITSFNDFS MQASCSEAAE  300
QRNCTGPEEI KQALFRNAGY GGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166173ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G142800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310970.0KT031097.1 Glycine max clone HN_CCL_167 bHLH transcription factor (Glyma01g02390.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158320.10.0hypothetical protein PHAVU_002G142800g
SwissprotQ9LSL15e-79BH093_ARATH; Transcription factor bHLH93
TrEMBLV7CJL70.0V7CJL7_PHAVU; Uncharacterized protein
STRINGXP_007158319.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-81beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]