PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G139500.1
Common NamePHAVU_002G139500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 348aa    MW: 39235 Da    PI: 6.9969
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G139500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.6e-181562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEde+l+d++ ++  g+W+t +++ g++R++k+c++rw +yl
  Phvul.002G139500.1 15 KGPWTPEEDEKLIDYISKHCHGSWRTLPKRAGLNRCGKSCRLRWTNYL 62
                        79********************************************97 PP
2Myb_DNA-binding51.72e-1668112147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg +T+e++  +++++  lG++ W++Ia++++ gRt++++k++w+++
  Phvul.002G139500.1  68 RGQFTEEDERVIINLHSVLGNK-WSKIAAHLP-GRTDNEIKNYWNTH 112
                         899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1031062IPR017930Myb domain
SuperFamilySSF466892.77E-3112109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-231265IPR009057Homeodomain-like
SMARTSM007171.3E-131464IPR001005SANT/Myb domain
PfamPF002496.1E-161562IPR001005SANT/Myb domain
CDDcd001672.16E-101762No hitNo description
PROSITE profilePS5129427.41963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2666117IPR009057Homeodomain-like
SMARTSM007173.5E-1567115IPR001005SANT/Myb domain
PfamPF002499.0E-1568112IPR001005SANT/Myb domain
CDDcd001671.49E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGRSPCREEI RGVKKGPWTP EEDEKLIDYI SKHCHGSWRT LPKRAGLNRC GKSCRLRWTN  60
YLRPDIKRGQ FTEEDERVII NLHSVLGNKW SKIAAHLPGR TDNEIKNYWN THIRKKLLKM  120
GIDPETHKPR TDLNHLMSLS QLLGMSNLSS VTSTTWGSNH LGLQPDITQL AKIQLLQNLL  180
QLMNNNSFVN MGNPYLLGNL NPSFLNGTNP LQTKEPVVLS GSERFVNPSV YSQAQSECSQ  240
QQDVSKSLAD AEGGSVPQDL DYNKISSTNH SRENQEENPL PALVSASPRM GTFNQMDSCG  300
NLAQTSTESP SNTFFDDWEK LLDDERSDSY WKEILDFTST SASPIMW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30151177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G139500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158283.10.0hypothetical protein PHAVU_002G139500g
TrEMBLV7CJC30.0V7CJC3_PHAVU; Uncharacterized protein
STRINGXP_007158283.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-87myb domain protein 9