PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G138500.1
Common NamePHAVU_002G138500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 491aa    MW: 54230.4 Da    PI: 4.7818
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G138500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.29.6e-37211122102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y+++ed++++ ++sws+++nsf+v+d+ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+
  Phvul.002G138500.1  21 FLSKTYDMVEDPSTDAIVSWSATNNSFIVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 102
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i r+k 
  Phvul.002G138500.1 103 LLRNITRRKP 112
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.16E-3616110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-6517110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.5E-4018110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.4E-3321110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-202144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-205971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MDSGGSAPAA PIPNANAPPP FLSKTYDMVE DPSTDAIVSW SATNNSFIVW DPPEFARDLL  60
PKYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ KHLLRNITRR KPAHGQNHQQ  120
AQQPHGQSSS VGACVEVGKF GLEEEVERLQ RDKNVLMQEL VRLRQQQQTT DNQLQTMVQR  180
LQGMEQRQQQ MMSFLAKAVQ SPGFFAQFVQ QQNESNKRIT EVNKKRRLKR EGNAETECAA  240
NPDGRIVKYQ PLVNEAAKAI LKQIMKWDTS HVESFNKNPD DYMIGDASSS SSGMDSSGSS  300
GWTSGVTLKE VSPASVQSSH VPAATGTQGH VRPTVKPEIS SVPQAVASEN VTMDGGYVAP  360
SIPVSRADVV IPDLPPITQM VTGNILDIPE ENYMATETDE GYMDPSLGAA GSFPIDFEVI  420
SPDNIDDLLG NPSIWDEILQ TPVPEDIETS IADVSNGNEV QPTENGWNKT QRMDHLTEQM  480
GLLSSDTKRV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-291311018129Heat shock factor protein 1
5d5v_B4e-291311018129Heat shock factor protein 1
5d5v_D4e-291311018129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222229NKKRRLKR
2223228KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G138500.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158271.10.0hypothetical protein PHAVU_002G138500g
SwissprotQ401521e-169HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLV7CLX80.0V7CLX8_PHAVU; Uncharacterized protein
STRINGXP_007158271.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-123heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]