PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.002G132500.1 | ||||||||
Common Name | PHAVU_002G132500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 270aa MW: 30403 Da PI: 7.7488 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.9 | 4.5e-33 | 21 | 75 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Phvul.002G132500.1 21 KPRLRWTTDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 75 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-32 | 18 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.163 | 18 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.69E-16 | 21 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-24 | 21 | 76 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.5E-9 | 23 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.4E-23 | 119 | 165 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 270 aa Download sequence Send to blast |
MEGGGRESYN GVVMTMTRDP KPRLRWTTDL HDRFVDAVTK LGGPDKATPK SVLRLMGLKG 60 LTLYHLKSHL QKYRLGQQAR KQNEELNKEN SRCSFVNFSN RSSGPNTSYR GDNEGGEIPI 120 AEALRHQIEV QKRLEDQLEV QKKLQMRIEA QGKYLQAVLE KAQRTLSLDG SGSLEASRAQ 180 LTEFNSALSN FMENMNKDSK ENIIEVTDFY NKNHGSDFHY EEVGREQNRD QKPKIEGGSI 240 EFDLNIKGSN DLVSAGGAEM DVNMISYRG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-18 | 21 | 74 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 21 | 74 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 21 | 74 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 21 | 74 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.002G132500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-180 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007158199.1 | 0.0 | hypothetical protein PHAVU_002G132500g | ||||
Swissprot | C0SVS4 | 9e-83 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | V7CLJ1 | 0.0 | V7CLJ1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007158199.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5101 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45580.1 | 3e-84 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.002G132500.1 |
Entrez Gene | 18637837 |
Publications ? help Back to Top | |||
---|---|---|---|
|