PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G126900.1
Common NamePHAVU_002G126900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 1475aa    MW: 166727 Da    PI: 6.5873
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G126900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR121.95.7e-078178981189
                FAR1  11 GFsvrkskskks.....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                         GF +++ +s++      k+n+  t   + C ++gk ++ k++    ++ +++++++C  kl+ k  k +++w+v+ +   HnH+l
  Phvul.002G126900.1 817 GFVLTILRSETCtrsnkKNNKGKTYVIMGCERSGKYRPYKNT---LSKVTSTKKCECPFKLRAKALKkNERWVVKVMCGCHNHDL 898
                         55554444333222233455556777788********99888...78889999**********98888***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF746501.19E-1645164IPR011013Galactose mutarotase-like domain
CDDcd147521.72E-1770192No hitNo description
PfamPF138021.1E-1489154IPR025887Glycoside hydrolase family 31, N-terminal domain
PfamPF010551.7E-123179607IPR000322Glycoside hydrolase family 31
SuperFamilySSF514452.05E-84189531IPR017853Glycoside hydrolase superfamily
CDDcd066040192531No hitNo description
Gene3DG3DSA:3.20.20.706.2E-4214278IPR013785Aldolase-type TIM barrel
Gene3DG3DSA:3.20.20.706.2E-4315352IPR013785Aldolase-type TIM barrel
PROSITE patternPS001290342349IPR030458Glycosyl hydrolases family 31, active site
Gene3DG3DSA:3.20.20.706.2E-4387410IPR013785Aldolase-type TIM barrel
PfamPF171379.8E-10625692IPR033403Domain of unknown function DUF5110
PfamPF087311.2E-4844898IPR014842Transcription factor AFT
PfamPF105518.3E-2610121108IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 1475 aa     Download sequence    Send to blast
MARSKRRRSG ISGSNVRPRM IFQPIIEDGV FRFDCSVKVR ETASPSISFV NSKDRDTPLS  60
TEKVPLYNPT FEIRLEQQIV KLELPVGSSL YGTGEVSGQL ERTGQRVYTW NTDAWGYGPE  120
TTSLYQSHPW VLAVLPNGEG LGILADTTRR CEIDLRKEST IQFVAPSSYP VITFGPFASP  180
TEVLISLSKA IGTVFMPPKW SLGYHQCRSS YLSDKVLEVA KTFQKKSIPC DVIWMETDYM  240
DGFRCFTFDK DRFQDPGSLV KDLQCSGFKV IWMLDPGIKQ EEGYFVYDSG SKNDVWIQNA  300
DETPFVGEVW AGPCVFPDYT QSKVRAWWAS LVKDFISSGV DGIWNDMNEP TIFKVETKTM  360
PDSNVHRGDS ELGGCQNHSF YHNVYGLLMA RSTYEGMKQA NEEKRPFILT RAGFIGSQRY  420
AATWTGDNLS TWEHLRMSIS MVLQLGLSGQ PLSGADIGGF AGNATPRLFG RWMGVGSLFP  480
FCRGHSEACT TDHVPWSFGE ECEEVCRLAL KRRYRLIPLI YTLFYFAHTR GTPVATPTFF  540
ADPKDPSLRK LENSFLLGPV LVYASTIHAQ GLDKLEITLP KGIWLRFDFS DAHPDLPALY  600
LKGGSIIPVG LSVQHVEEAN PSDDLTLFVA LDEHGKAEGV LFEDDGDGYE FTKGNYLLTH  660
YVADLKSSVV TVSVHKTEGS RERPKRRLHI QLLLGGGAML DTWGTDGEVL QLILPSEDEV  720
LKLVSTSETQ YKDCLENAIP IPDVEVVSGP KGTEMTLFER KSDIEDHVSK MSKEVLIPTD  780
GAVRKPGDCS DAFNTTEVFP SRDAMLNWAR EVARVNGFVL TILRSETCTR SNKKNNKGKT  840
YVIMGCERSG KYRPYKNTLS KVTSTKKCEC PFKLRAKALK KNERWVVKVM CGCHNHDLGE  900
TLVVGHSYAG RLSAEEKSIV IDMTKNMVEP RNILLTLKDH NNETTIRHIY NARQAYRSSQ  960
KGPRTEMQHL QKLLEYDQYV YWNRKVDDSD AISDMFWTHP DAIKLLSAFH IVLLLDNTYK  1020
VNRYRLPLLE IVGVTSTELT FSVAFAYLES EQVDNFTWAL QKLRGLFVKD SEIPPVIVSV  1080
RDIALMNAVQ AVFPNSSNLL CRFHIGKNVK AKCKMIVHPK EQYDLVMDAW HNVMNSPNEG  1140
EYMQRLALFD KVCSDFPNFG DYVKDTWLTP HKEKFVTAWI DKVMHLGNTT LNRVETAHWR  1200
LENMLEDSKG DICSCWDAMN NMIKLQHKEI KVSFEKSINT VEYNTLFYKK LVGFVSRSAL  1260
SYISDQYDRI MTVGIDSSIC GCTIRTTHGL PCACELARYN MHHPVPLQEV QVPGRLDFRF  1320
QEMNEEGSEV SLQPVPLQPV PLQAIHIHWR RLSFIVQEMN GDGSEVSLQR EIDALHKQFQ  1380
DLDYAGKVTL KAKLRELALP DITLMCSAPE KVRTNDAPQD LGSKRDKSVE SDPLYWEHID  1440
PHSANDDITD RPSSEKPVHG LNHESFTYDG PNSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5djw_A0.06967943649Alpha-glucosidase II
5djw_B0.06967943649Alpha-glucosidase II
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G126900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007158130.10.0hypothetical protein PHAVU_002G126900g
TrEMBLV7CJ140.0V7CJ14_PHAVU; Uncharacterized protein
STRINGXP_007158130.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-14FAR1-related sequence 5