PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G112200.1
Common NamePHAVU_002G112200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27384.6 Da    PI: 9.7046
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G112200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.4e-30959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k ien +nrqvt+skRrngi+KKA+ELSvLCda+v++i+fs+++k++ey+s
  Phvul.002G112200.1  9 KLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYIS 59
                        569**********************************************86 PP
2K-box68.81.8e-23761736100
               K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGe..dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                         g   l+ +++e++ ++l+kLk+ +++L+r++Rh++Ge  dL++Ls+++L+ Le+++  s+ kiR++K +++++ +++ +kk k+l++ n +
  Phvul.002G112200.1  76 GDIdLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEglDLDELSFQQLRTLEEDMVASIGKIRERKFHVIKTRTDTCRKKVKSLEQMNGN 166
                         43359*******************************9445789************************************************ PP

               K-box  94 Lrkklee 100
                         L  +l+e
  Phvul.002G112200.1 167 LLLELKE 173
                         9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.497161IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-41160IPR002100Transcription factor, MADS-box
CDDcd002653.83E-38277No hitNo description
SuperFamilySSF554555.1E-35296IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-1883170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.02885177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGKIEIKL IENPTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIMFSK NNKMHEYISP  60
GLTTKKIVDQ YQKTLGDIDL WRSHYEKMLE NLKKLKDINN KLRRQIRHRI GEGLDLDELS  120
FQQLRTLEED MVASIGKIRE RKFHVIKTRT DTCRKKVKSL EQMNGNLLLE LKEKCVIHPQ  180
FLLHDEGDEE SAVALANGAS TLYAFCQHHT HLNLPSHQHQ HHGEEPFKTD DLRLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15162162MEF2 CHIMERA
6byy_B1e-15162162MEF2 CHIMERA
6byy_C1e-15162162MEF2 CHIMERA
6byy_D1e-15162162MEF2 CHIMERA
6bz1_A1e-15162162MEF2 CHIMERA
6bz1_B1e-15162162MEF2 CHIMERA
6bz1_C1e-15162162MEF2 CHIMERA
6bz1_D1e-15162162MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G112200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0942830.0BT094283.1 Soybean clone JCVI-FLGm-14H3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157954.11e-175hypothetical protein PHAVU_002G112200g
SwissprotQ003J21e-100TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLV7CKR21e-174V7CKR2_PHAVU; Uncharacterized protein
STRINGXP_007157954.11e-174(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-62MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]