PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G103400.1
Common NamePHAVU_002G103400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 438aa    MW: 47794.9 Da    PI: 7.9792
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G103400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.7e-30170226259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK+vkgs+f+rsYY+Ct+++Cpvkkk+e +  +++v+ i+Y+geHnh+
  Phvul.002G103400.1 170 DDGYNWRKYGQKPVKGSNFSRSYYKCTHPNCPVKKKLELTL-QGHVTAIIYKGEHNHQ 226
                         8**************************************99.9**************8 PP
2WRKY107.18.5e-34327385159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Phvul.002G103400.1 327 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVVTTYEGKHNHD 385
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-25158227IPR003657WRKY domain
SuperFamilySSF1182903.27E-23167227IPR003657WRKY domain
SMARTSM007746.1E-30169227IPR003657WRKY domain
PROSITE profilePS5081119.818169228IPR003657WRKY domain
PfamPF031069.0E-23170226IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.4E-37313387IPR003657WRKY domain
SuperFamilySSF1182901.14E-29319387IPR003657WRKY domain
PROSITE profilePS5081138.744322387IPR003657WRKY domain
SMARTSM007742.4E-39327386IPR003657WRKY domain
PfamPF031065.4E-26328385IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MLGGGNGDGE AAPPSTAARS RSDLRPRAST ESVFNCGDTA GYSPGPMTLF SSLFGDGDGD  60
EYKSFSEFLA GAMVDPIPLR SSPDSASQGQ FGMTQQQMLA QVTAHTNVQI QAEHATSLTQ  120
VPTTISTTVP QLISLPPPSM SASGVTKSFG FFHSQQKLHS PSIIVDKPND DGYNWRKYGQ  180
KPVKGSNFSR SYYKCTHPNC PVKKKLELTL QGHVTAIIYK GEHNHQRKTT KGTLTSSGNS  240
DRLKEEMSSH SMSQVDLEFS QAEHGSGTSD SEEVGYYETE VDEKNDEPDP KRRNTKAKLE  300
DPASLNLHRT VAESRIIVQT TSEVDLLDDG YRWRKYGQKV VKGNPYPRSY YKCTTPGCNV  360
RKHVERASTD PKAVVTTYEG KHNHDVPTVK TNSHTLANNT ASQLKPKNVT DEKHGFSSRG  420
VGGYEQGPVA SLTLKQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-43170387877Probable WRKY transcription factor 4
2lex_A2e-43170387877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G103400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-114AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157850.10.0hypothetical protein PHAVU_002G103400g
SwissprotQ9ZQ701e-115WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLV7CIA00.0V7CIA0_PHAVU; Uncharacterized protein
STRINGXP_007157850.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.21e-122WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]