PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G085400.1 | ||||||||
Common Name | PHAVU_002G085400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 265aa MW: 29329.4 Da PI: 8.8279 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99.2 | 2.9e-31 | 40 | 97 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v YkeClkNhAas+Ggha+DGCgEfmps++++ +++++l+CaACgCHRnFH r++++ Phvul.002G085400.1 40 VVCYKECLKNHAASIGGHALDGCGEFMPSSSSNpTEPRSLTCAACGCHRNFHHRDTQQ 97 689**************************99999*******************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.2E-27 | 41 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.594 | 43 | 94 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-19 | 43 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.0E-29 | 43 | 94 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.07E-19 | 161 | 234 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.1E-30 | 167 | 234 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.0E-26 | 173 | 230 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MDLTNNANTT HANPQTPQHP TTKRHRPTTA PPPSQPPSAV VCYKECLKNH AASIGGHALD 60 GCGEFMPSSS SNPTEPRSLT CAACGCHRNF HHRDTQQYHS NPRPNFISFY HSPPPPHHGP 120 GLCTSPSPSP LSSPSPPPLS HHFPGRRPVL GLFGPGNEHH HTSFHLSESP SGKKRFRTKF 180 SQEQKEKMQN FSEKLGWRMQ KGDEGLVQDF CNEIGVSRGV FKVWMHNNKN TCRKRSLEPD 240 ENTNANASDT LNNNPYSTNH DTQN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-21 | 174 | 231 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G085400.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-170 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007157626.1 | 0.0 | hypothetical protein PHAVU_002G085400g | ||||
Swissprot | Q9LXG0 | 5e-52 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
Swissprot | Q9SEZ1 | 2e-52 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | V7CJZ1 | 0.0 | V7CJZ1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007157626.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 9e-51 | homeobox protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G085400.1 |
Entrez Gene | 18637354 |
Publications ? help Back to Top | |||
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