PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G083800.1 | ||||||||
Common Name | PHAVU_002G083800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 463aa MW: 51097.3 Da PI: 6.5557 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.2e-16 | 139 | 184 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ Phvul.002G083800.1 139 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 184 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 191 | 234 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ Phvul.002G083800.1 191 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 234 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.17 | 134 | 185 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 138 | 187 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-16 | 139 | 184 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.99E-28 | 139 | 232 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 140 | 192 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.76E-13 | 142 | 183 | No hit | No description |
PROSITE profile | PS51294 | 26.929 | 186 | 240 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-14 | 190 | 238 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 191 | 233 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-11 | 193 | 233 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-20 | 193 | 239 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MASSKCCMIS SQQNQNAPTC CPFPSPPSMG MVYADMMGSL SLSTVSNALS SQESYGYGHS 60 HDHGQASGVE NGRSTSWTFP FMREFLSSNF EDCSDVGAGE SNSNDKTTNN GKFSEESNPN 120 ENPLSGKEVD SGHSKLCARG HWRPAEDSKL KELVALYGPQ NWNLIAEKLE GRSGKSCRLR 180 WFNQLDPRIN RRAFSEEEEE RLMQAHRIYG NKWAMIARLF PGRTDNAVKN HWHVIMARKY 240 REQSSAYRRR RMSQSVYKRV EQNPTFLCSR DNASTAEQDP TPSYCLHLLH NDVGITNNVF 300 SFPSFHGVGA GEIVEFGSNG SPQNMTGGSE TMSNTPQLGL CAQPQQAPFD FFSGGGSKDT 360 MGEANGQIRS WERTNESLHH HCQQSGSYPH YPQQYLMAMQ QLDNNSCNNF YSFLNSSSAS 420 TTTGNEPSSS PCVAGIRDKV VNSDPPDGVP PPFFDFLGVG AT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-34 | 139 | 239 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G083800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007157609.1 | 0.0 | hypothetical protein PHAVU_002G083800g | ||||
TrEMBL | V7CJS2 | 0.0 | V7CJS2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007157609.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-77 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G083800.1 |
Entrez Gene | 18637338 |