PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G056800.1
Common NamePHAVU_002G056800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 188aa    MW: 20656.5 Da    PI: 9.9288
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G056800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-182776255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Phvul.002G056800.1 27 HYRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFPTPEMAARAHDVAALTIKG 76
                        8*****998.**********854...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.7E-322685IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-212785IPR016177DNA-binding domain
PfamPF008472.6E-122776IPR001471AP2/ERF domain
SMARTSM003802.0E-382790IPR001471AP2/ERF domain
PROSITE profilePS5103223.3672784IPR001471AP2/ERF domain
CDDcd000181.21E-322786No hitNo description
PRINTSPR003671.9E-102839IPR001471AP2/ERF domain
PRINTSPR003671.9E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MVEKKKNEAD EAKKKKKKKK RESEKKHYRG VRMRQWGKWV SEIREPKKKS RIWLGTFPTP  60
EMAARAHDVA ALTIKGTSAF LNFPELASHL PRPPTTSPKD IQAAAAEAAA LNCEAQPLVQ  120
AQAQAQIRAS SLNDGDDAFL DLPDLLADSS QSAGGFGYSA LWLVAAPEHL NSAFPLHDPP  180
FLWDSSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-182384163ATERF1
3gcc_A6e-182384163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320KKKNEADEAKKKKKKKKR
21220KKKKKKKKR
31420KKKKKKR
41525KKKKKRESEKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00436DAPTransfer from AT4G16750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G056800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-173AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157270.11e-135hypothetical protein PHAVU_002G056800g
SwissprotQ9SUK81e-48ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLV7CGL91e-133V7CGL9_PHAVU; Uncharacterized protein
STRINGXP_007157270.11e-134(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.13e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]