PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G055800.1
Common NamePHAVU_002G055800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 305aa    MW: 33907.1 Da    PI: 8.692
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G055800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-20167217255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp+++g   r++lg+f ta eAaka+++a+ +l+g
  Phvul.002G055800.1 167 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFETALEAAKAYDRAAFRLRG 217
                         8********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.44E-31166225No hitNo description
Gene3DG3DSA:3.30.730.102.3E-32166226IPR001471AP2/ERF domain
PfamPF008475.1E-14167217IPR001471AP2/ERF domain
PROSITE profilePS5103224.25167225IPR001471AP2/ERF domain
SMARTSM003803.0E-37167231IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-22167226IPR016177DNA-binding domain
PRINTSPR003671.5E-13168179IPR001471AP2/ERF domain
PRINTSPR003671.5E-13207227IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MANPNPLQLS ALNQIKLHLL GELSPLPLTP SSNLTTTNFS FLFQEPDPTS SQSSSLCSQS  60
STSNSSATLD NFFSDFFDFS PTSTQNQFPL FQIDSKPQIL DHQTPKPHPQ TSTSEFTFPN  120
TQDCKKPQPN RKPSLQISLP KKTEWIQFGE GEVAGKVAQK AAEEKKHYRG VRQRPWGKFA  180
AEIRDPNKRG SRVWLGTFET ALEAAKAYDR AAFRLRGSKA ILNFPLEAGA DNRKRQREEE  240
EPVPEVVKRE KIEDSDVTRI RDAPLTPSSW PGFWASDANG IFAVPPLSPL SPHPAMGYPQ  300
LMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-31166226161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-31166230468ATERF1
3gcc_A4e-31166230468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G055800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157260.10.0hypothetical protein PHAVU_002G055800g
SwissprotO803412e-63EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLV7CGL00.0V7CGL0_PHAVU; Uncharacterized protein
STRINGXP_007157260.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-59ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]