PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G048200.2
Common NamePHAVU_002G048200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 728aa    MW: 80076.5 Da    PI: 6.4672
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G048200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox628.9e-2061116156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         ++  +++t+ q+ee+e++F+++++p+ ++r+eL++ lgL+  qVk+WFqN+R+++k
  Phvul.002G048200.2  61 KKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRDLGLEPLQVKFWFQNKRTQMK 116
                         5778899**********************************************999 PP
2START199.91.1e-622484681206
                         HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         ela +a++el ++a+a++ +Wv      e++n++++l++f++          ++ea+r+s+v +m++ +l  +l+d++ qW++++     +
  Phvul.002G048200.2 248 ELAVAAMEELTRLAQAGDSLWVPGNhhsEILNEEDYLRTFPSRSLgpkplgLRSEASRESVVIIMNHINLIDILMDVN-QWSTMFCgivsR 337
                         57899*****************988889************77655*********************************.******999*** PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                         a tlev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g w++vdvS+d+ ++ +    + R++++pSg+li++++ng+s
  Phvul.002G048200.2 338 ALTLEVLSTGvagnynGALQVMSAEFQVPSPLVPtRENYFVRYCKQQPDGIWAVVDVSLDNLRPST----ISRSRRRPSGCLIQELPNGYS 424
                         ****************************************************************88....79******************* PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kvtw+ehv++++r +h++++ lv+sgla+gak+wvatl+rqce+
  Phvul.002G048200.2 425 KVTWIEHVEVDDRAVHSIYKTLVNSGLAFGAKRWVATLDRQCER 468
                         ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-2244116IPR009057Homeodomain-like
SuperFamilySSF466891.59E-1845118IPR009057Homeodomain-like
PROSITE profilePS5007116.50358118IPR001356Homeobox domain
SMARTSM003893.4E-1860122IPR001356Homeobox domain
CDDcd000861.47E-1761119No hitNo description
PfamPF000462.6E-1761116IPR001356Homeobox domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PROSITE profilePS5084844.574239471IPR002913START domain
SuperFamilySSF559611.24E-36240470No hitNo description
CDDcd088759.94E-121243467No hitNo description
SMARTSM002341.0E-63248468IPR002913START domain
PfamPF018525.7E-52249468IPR002913START domain
Gene3DG3DSA:3.30.530.202.9E-6347468IPR023393START-like domain
SuperFamilySSF559616.46E-23489718No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MFHTNMFDSH PHMLDMSPHK TTFSETDLGR PRDDEYETKS GTDTMDAPSG DDQDPNPRPR  60
KKGYRRHTQR QIEEMEAFFK QCPHPDDKQR KELSRDLGLE PLQVKFWFQN KRTQMKTQHE  120
RHENSILKAE NEKLRAENNR YKEALTNATC PNCGGPAALG EMSFDEQHLR IENARLREEI  180
DRISGIAAKY VGKPVTSSYS NLSSLNNNRM PVGNYGAQSD TVGEMYGGSD PFRSLPAPAD  240
ADKPMIVELA VAAMEELTRL AQAGDSLWVP GNHHSEILNE EDYLRTFPSR SLGPKPLGLR  300
SEASRESVVI IMNHINLIDI LMDVNQWSTM FCGIVSRALT LEVLSTGVAG NYNGALQVMS  360
AEFQVPSPLV PTRENYFVRY CKQQPDGIWA VVDVSLDNLR PSTISRSRRR PSGCLIQELP  420
NGYSKVTWIE HVEVDDRAVH SIYKTLVNSG LAFGAKRWVA TLDRQCERLA SSMANNIQPG  480
NLCVITSAEG RKSMLKLAER MVISYCTGVG ASTAHAWTTL SATGSDDVRV MTRKSTDEPG  540
RPPGIVLSAA TSFWLPVPPK KVFDFLRAEN SRNEWDILSN GGLVQELAHI ANGREPGNCV  600
SLLRVNSANS SQSNMLILQE SCTDSTGSYV VYAPVDIVAM NVVLGGGDPD YVALLPSGFA  660
ILPDGPGINR GSIHDVGSGG SLLTVAFQIL VDSAPTAKLS LGSVATVNSL IKCTVERIKV  720
AVIRDNT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G048200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157166.10.0hypothetical protein PHAVU_002G048200g
RefseqXP_007157167.10.0hypothetical protein PHAVU_002G048200g
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLV7CIR70.0V7CIR7_PHAVU; Uncharacterized protein
STRINGXP_007157166.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]