PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G040900.1
Common NamePHAVU_002G040900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 325aa    MW: 36394.7 Da    PI: 6.7522
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G040900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.9e-191360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd+ lvd+++++G g+W++ ++  g++R++k+c++rw +yl
  Phvul.002G040900.1 13 KGPWSPEEDQTLVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 60
                        79********************************************97 PP
2Myb_DNA-binding537.8e-1766111148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++++eE++l++++++ lG++ W++Ia++++ gRt++++k+ w+++l
  Phvul.002G040900.1  66 RGKFSEEEEKLIINLHAVLGNK-WAAIASHLP-GRTDNEIKNLWNTHL 111
                         89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.788860IPR017930Myb domain
SuperFamilySSF466894.77E-3210107IPR009057Homeodomain-like
SMARTSM007173.7E-151262IPR001005SANT/Myb domain
PfamPF002491.2E-171360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-251467IPR009057Homeodomain-like
CDDcd001678.57E-121560No hitNo description
PROSITE profilePS5129426.16961115IPR017930Myb domain
SMARTSM007172.8E-1565113IPR001005SANT/Myb domain
PfamPF002495.1E-1666111IPR001005SANT/Myb domain
CDDcd001675.45E-1268111No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2668115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MRTLSSDESG LKKGPWSPEE DQTLVDYIQK HGHGSWRALP KLAGLNRCGK SCRLRWTNYL  60
RPDIKRGKFS EEEEKLIINL HAVLGNKWAA IASHLPGRTD NEIKNLWNTH LRKKLLKMGL  120
DPMTHRPRTD HLNLLTNLHQ ILAAAKIVSS FTNPSDINNA LRLHSNLAKF QSLQQNMFQL  180
TGASNSEPLN PFAPLNSLQD GFVNDVLGLN HHSNLLNLQH DDDSLFQMHP SFQNFEALQQ  240
PTQDGSLNAD PSPSNSLPNL VSASPESSPV KEAEKVNANS KDCSNPCSTT FELTWGDFMD  300
EDATETYWKG FIDQHSNQTW STVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-301111525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G040900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157076.10.0hypothetical protein PHAVU_002G040900g
SwissprotQ9SBF31e-78MYB92_ARATH; Transcription factor MYB92
TrEMBLV7CIF10.0V7CIF1_PHAVU; Uncharacterized protein
STRINGXP_007157076.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.25e-87myb domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]