PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G036000.1
Common NamePHAVU_002G036000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 267aa    MW: 30003.9 Da    PI: 6.5806
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G036000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1878127255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr++k +g+Wv+eIr+p   gk+ r++lg++ ++e+Aa+a++ a++ l+g
  Phvul.002G036000.1  78 SYHGVRQRK-WGKWVSEIREP---GKKSRIWLGSYESPEMAAAAYDVAALHLRG 127
                         69******9.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.7E-3178136IPR001471AP2/ERF domain
PROSITE profilePS5103222.5578135IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-2178136IPR016177DNA-binding domain
PfamPF008473.7E-1278127IPR001471AP2/ERF domain
SMARTSM003801.4E-3578141IPR001471AP2/ERF domain
PRINTSPR003675.2E-127990IPR001471AP2/ERF domain
CDDcd000181.14E-2079137No hitNo description
PRINTSPR003675.2E-12117137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MFPTYLCNYH EPYLFSISPY ITSHHTHLHS QTFTNQIAPN ALLQTRKKKL CFHSMEQEPT  60
STMQQCGIAP TTSKTTTSYH GVRQRKWGKW VSEIREPGKK SRIWLGSYES PEMAAAAYDV  120
AALHLRGRAA KLNFPELAET LPRPASSKSE DVQMAAQQAA LRFTRSPTMS HNQICMSETS  180
NSNSNSSGVV PLQVGLSATQ IQAINESPLE SPKMWMMQMA ETPRFGFGDE YSMMMVSCDG  240
DDGYGMELSG WEEMHHESLW DSPEYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1779135360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-1779135663ATERF1
3gcc_A6e-1779135663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G036000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-136AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157008.10.0hypothetical protein PHAVU_002G036000g
SwissprotQ9C9I22e-50ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLV7CFM10.0V7CFM1_PHAVU; Uncharacterized protein
STRINGXP_007157008.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-44ERF family protein