PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G035900.1 | ||||||||
Common Name | PHAVU_002G035900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 183aa MW: 20227.7 Da PI: 6.0058 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.3e-18 | 17 | 66 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+Wv+eIr+p g ++r++lg+f t+e+Aa+a++ a++ ++g Phvul.002G035900.1 17 AYRGVRKRK-WGKWVSEIREP---GTKTRIWLGSFETPEMAAAAYDVAALHFRG 66 69****999.**********8...325***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-23 | 16 | 75 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.17E-23 | 16 | 76 | No hit | No description |
SMART | SM00380 | 9.1E-38 | 17 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.0E-12 | 17 | 66 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-32 | 17 | 75 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.881 | 17 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MEMPSSSSTH VGAASSAYRG VRKRKWGKWV SEIREPGTKT RIWLGSFETP EMAAAAYDVA 60 ALHFRGRDAR LNFPELASTL PRPVSNNADH IRMAAHEAAL RLRTNPAAAE TGGGSLTAPP 120 LTVRLSPTQI QAINDSPMDS PQTWMQMPDT FMMHDQSMMF ANGYAFEDNE WENMQSDSLW 180 DP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-15 | 13 | 74 | 1 | 63 | ATERF1 |
3gcc_A | 1e-15 | 13 | 74 | 1 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G035900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007157007.1 | 1e-133 | hypothetical protein PHAVU_002G035900g | ||||
Swissprot | Q9C9I2 | 2e-63 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | V7CJB3 | 1e-132 | V7CJB3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007157007.1 | 1e-133 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1777 | 31 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 2e-64 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G035900.1 |
Entrez Gene | 18636840 |