PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G019100.1
Common NamePHAVU_002G019100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 285aa    MW: 31522.5 Da    PI: 8.3743
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G019100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.48.2e-37101012102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye++ed+ ++e+isws++gn+fvv+++ +fak++Lpk Fkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+gkke
  Phvul.002G019100.1  10 FLTKTYELVEDPGTNEVISWSDSGNTFVVWKHADFAKDLLPKSFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANEHFKRGKKE 91 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++ikr+k+
  Phvul.002G019100.1  92 LLCDIKRRKT 101
                         ********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.9E-61699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.26E-34799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.9E-38799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.6E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.9E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSQRSVPAPF LTKTYELVED PGTNEVISWS DSGNTFVVWK HADFAKDLLP KSFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANEHFKRGKK ELLCDIKRRK TVPQLPALPP EAGKSGGDGS  120
SPLNSGGGDE AGSTSTSSSS SGSKNTGLVE TNTTVSHELS SENQKLKKDN ETLSCELARA  180
RKQCDELVAF LKNRLMVGPD QIDRIMRQGS CGSEKAVGEE GGEECLKLFG VWLKEDTLAD  240
KRNNHHKRVR EEQMGFGGPR LKESKPVVDF EPLNLIMTSN KVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-27510125131Heat shock factor protein 1
5d5v_B3e-27510125131Heat shock factor protein 1
5d5v_D3e-27510125131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G019100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156806.10.0hypothetical protein PHAVU_002G019100g
SwissprotP223352e-85HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLV7CHP10.0V7CHP1_PHAVU; Uncharacterized protein
STRINGXP_007156806.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-71heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]