PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G009200.1
Common NamePHAVU_002G009200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 176aa    MW: 20454 Da    PI: 11.189
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G009200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.97e-1173133363
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+++ rr+++NR +ArrsR RK+  +e+L++    +  eN++L + l+ l  ++ ++++e+
  Phvul.002G009200.1  73 EDRKRRRMISNRDSARRSRMRKQRHLENLRNQTNLFRVENRELNSGLQFLLRHYNRVRTEN 133
                         68899*****************************************999998888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.4E-869129No hitNo description
SMARTSM003381.2E-1271135IPR004827Basic-leucine zipper domain
PfamPF001701.1E-873133IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.25473136IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.43E-1075126No hitNo description
CDDcd147024.35E-1576127No hitNo description
PROSITE patternPS0003607893IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MFSALPASQP FQGNAFPALD YAFTPWDEAQ FLDFNPTSPN PVTSSSASDD PTPTAADQNL  60
ASDQSNRVVS LMEDRKRRRM ISNRDSARRS RMRKQRHLEN LRNQTNLFRV ENRELNSGLQ  120
FLLRHYNRVR TENEWLRSER TLLRQKLADI NQILLFRQLQ PFSTAWPCNI GRMNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17478RKRRR
28794RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G009200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-169AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156692.11e-125hypothetical protein PHAVU_002G009200g
TrEMBLV7CIH81e-124V7CIH8_PHAVU; Uncharacterized protein
STRINGXP_007156692.11e-124(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54353254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.23e-23basic leucine-zipper 6