PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G262600.1
Common NamePHAVU_001G262600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 454aa    MW: 49627.1 Da    PI: 7.693
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G262600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.24.3e-42172247277
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         CqvegC  dls+ak+yhr+h+vCe+hsk+p+vl++gle+rfCqqCsrfh+lsefD++krsCr+rL++hn+rrrk+ 
  Phvul.001G262600.1 172 CQVEGCGLDLSSAKDYHRKHRVCEAHSKSPKVLIAGLERRFCQQCSRFHALSEFDDKKRSCRKRLSDHNARRRKPL 247
                         **************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-34164233IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.582169246IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-39170251IPR004333Transcription factor, SBP-box
PfamPF031102.6E-32172245IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEWNAKSLGQ WDWEHLFFFN TKATENPRLP PTDCSSEADR ELNAGVLYPS GGSACSGSEL  60
VHASSPRSSK SASNNSSSNG DSKASVLTLE GSQDDSTGKK ELCSGEPVET SQSAEPSPVS  120
GEPLLTLKLG KRLYFEDVCA GSDSKKPSSF EAPVSSGKKY KTSSQNLQHP SCQVEGCGLD  180
LSSAKDYHRK HRVCEAHSKS PKVLIAGLER RFCQQCSRFH ALSEFDDKKR SCRKRLSDHN  240
ARRRKPLPDS IQLNPSALSS SPYDGRQIMS PFAFSRTGTN LVWQDVHSSK LPQTKDFLPK  300
PVKANNKIPS IVSMFSDDSS GLLTSRSIAA KTIIPGLEDP NPITSCDLNG AQDVNRALSL  360
LSSNSWAPYE TKSLSSRTSG ITQAITQSMT HHHQRSPFAS SSEFWHTDHQ QQPSPSTMTM  420
CISISDYDTN NRIQDFQLLS APFDSGFPCN HLD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-271722451184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227244KKRSCRKRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G262600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163771.10.0hypothetical protein PHAVU_001G262600g
TrEMBLV7D2M00.0V7D2M0_PHAVU; Uncharacterized protein
STRINGXP_007163771.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-61squamosa promoter binding protein-like 2