PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G258000.2
Common NamePHAVU_001G258000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARR-B
Protein Properties Length: 485aa    MW: 54533.3 Da    PI: 5.9217
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G258000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.41.9e-24128181155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Phvul.001G258000.2 128 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 181
                         68*******************.9*******************************8 PP
2Response_reg32.15.8e-1215653109
                         CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
        Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                         mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  Phvul.001G258000.2   1 MPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 56 
                         9************6644.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23009.5E-21183No hitNo description
CDDcd001563.33E-12161No hitNo description
PROSITE profilePS5011023.493162IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.99E-15174IPR011006CheY-like superfamily
PfamPF000726.6E-9157IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466894.75E-17126183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-27126185IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-21128181IPR006447Myb domain, plants
PfamPF002491.4E-7130180IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MPDMDGFKLL EHVGLEMDLP VIMMSVDGET SRVMKGVQHG ACDYLLKPIR MKELRNIWQH  60
VYRKRIHEAK EFESFESFES IHLMTNGSEL SDEGNLFAVE DVTSTKKRKD ADNKHDDKEC  120
MDPSSTKKAR VVWSVDLHQK FVKAVNQIGF DKVGPKKILD LMNVPWLTRE NVASHLQKYR  180
LYLIRIQKEN DRRSSSSGMK HSDFPSKDLG SFGFQNPVNK QQNDVSIDSY NYSDGSLQLQ  240
NVENKSHEGD KGTVSQFTIA KKGRPLRESS RVGLQQPFDC SMPTQYSWTE VPHTQLKEEH  300
KSLVHLEDSF NQMPLQGKQH PIQVDQSQSV ASISSVPSIR EEGVAACIEA KPLFSDFKND  360
QSSSVNSIGN AVDTFPIQPG SLVMNAQSLA SSTTNSGLKA HGYNNLSCIS DLEIYQRNLL  420
LGASAPLDED LHFHWLQGEC YNMNFGLQNI GMPEYYDPGL IAEAPSHLYD SSDYSVMDQG  480
LFIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17124186163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G258000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163715.10.0hypothetical protein PHAVU_001G258000g
TrEMBLV7D0260.0V7D026_PHAVU; Uncharacterized protein
STRINGXP_007163714.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.19e-83response regulator 11