PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G251200.1 | ||||||||
Common Name | PHAVU_001G251200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 296aa MW: 32793.7 Da PI: 5.3963 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.3e-20 | 117 | 167 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f taeeAa a+++a+ kl+ge Phvul.001G251200.1 117 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDNAAFKLRGE 167 59******9.**********965...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.65E-35 | 116 | 173 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-32 | 117 | 175 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-39 | 117 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-23 | 117 | 175 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.024 | 117 | 174 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 118 | 129 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-14 | 118 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MATVMDMYKN SSMMLSDFLD PCNDQELMKA LEPFMKSDSS TTSSITYPSL SFPSFSFSYE 60 SQKGLNQPSS IKLNQLTPSQ TFQIQAQIQV TRAQFLSPKP VPMKQVGGRV VSKPTKLYRG 120 VRQRHWGKWV AEIRLPKNRT RLWLGTFETA EEAALAYDNA AFKLRGENAR LNFHHLRHHG 180 GSVYGAFGTY KPLPSAVDAK LQAICQSLAI NTHKEEETAT TSEFEDVKVG NQTASSPLSD 240 EYSSSSSSSC AGSSSPESDI TFLDFSDSYE AMDNLGLDLE KYPSVEIDWE ALSES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-22 | 116 | 173 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G251200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007163638.1 | 0.0 | hypothetical protein PHAVU_001G251200g | ||||
Swissprot | O65665 | 3e-77 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
TrEMBL | V7CZQ4 | 0.0 | V7CZQ4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007163638.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 1e-62 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G251200.1 |
Entrez Gene | 18642502 |