PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G240300.1
Common NamePHAVU_001G240300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 300aa    MW: 34784.6 Da    PI: 8.5322
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G240300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.3e-092671346
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         WTteE +++  a + + ++   +W ++a++++ g++ +++   ++ 
  Phvul.001G240300.1 26 EWTTEENKKFESALAIYDKDtpdRWLRVAAMLP-GKSVYDVMKQYRE 71
                        6********************************.*******999986 PP
2Myb_DNA-binding42.51.5e-13126170347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+ +++ +  ++G+g+W+ I+r++  ++t+ q+ s+ qky
  Phvul.001G240300.1 126 PWTEEEHRRFLMGLLKYGKGDWRNISRKFVVTKTPTQVASHAQKY 170
                         7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.3012277IPR017884SANT domain
SMARTSM007176.6E-82375IPR001005SANT/Myb domain
CDDcd001673.56E-62672No hitNo description
PfamPF002491.7E-62671IPR001005SANT/Myb domain
SuperFamilySSF466894.52E-112679IPR009057Homeodomain-like
PROSITE profilePS5129418.701118175IPR017930Myb domain
SuperFamilySSF466894.16E-16121175IPR009057Homeodomain-like
TIGRFAMsTIGR015578.2E-17122174IPR006447Myb domain, plants
SMARTSM007174.3E-10123173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10124169IPR009057Homeodomain-like
CDDcd001672.34E-8126170No hitNo description
PfamPF002497.4E-11126170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MELETPYPSC FMSNSNWFVQ ESDYTEWTTE ENKKFESALA IYDKDTPDRW LRVAAMLPGK  60
SVYDVMKQYR ELEEDVSEIE AGRIPVPGYL TSCFSLEMVD NQCYDACRKK PATVRSSDQE  120
RKKGIPWTEE EHRRFLMGLL KYGKGDWRNI SRKFVVTKTP TQVASHAQKY YIRQKLCGGK  180
DNKRRPSIHD ITIINLTSDQ EKFNESHMPS EKLKLNSMTK LQLEWINRRN NTASLMVFNP  240
NYDMLMSPSS GTLSPKTLKL GQDFYECAFH DTYAKLKNPA FRTASRDFNK EAIFGIHAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1727971181RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G240300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312000.0KT031200.1 Glycine max clone HN_CCL_92 MYB/HD-like transcription factor (Glyma11g34930.7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163513.10.0hypothetical protein PHAVU_001G240300g
RefseqXP_007163514.10.0hypothetical protein PHAVU_001G240300g
SwissprotQ8S9H72e-84DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLV7CZA80.0V7CZA8_PHAVU; Uncharacterized protein
STRINGXP_007163513.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-89MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]