PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G224900.1
Common NamePHAVU_001G224900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 284aa    MW: 32533.1 Da    PI: 6.5237
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G224900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.8e-092212552155
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         + +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Phvul.001G224900.1 221 RWPYPTEEEKVKLSEVTGLDQKQINNWFINQRKRH 255
                         468*****************************885 PP
2ELK30.58.1e-11176196222
                 ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                         LK++LlrKYsg+ ++L++EF+
  Phvul.001G224900.1 176 LKEMLLRKYSGHFSGLRKEFL 196
                         9*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.6E-204084IPR005540KNOX1
PfamPF037909.1E-214282IPR005540KNOX1
SMARTSM012562.8E-2387138IPR005541KNOX2
PfamPF037912.0E-2292137IPR005541KNOX2
PROSITE profilePS512139.795175195IPR005539ELK domain
SMARTSM011882.1E-5175196IPR005539ELK domain
PfamPF037898.1E-9176196IPR005539ELK domain
PROSITE profilePS5007112.568195258IPR001356Homeobox domain
SuperFamilySSF466893.25E-19197270IPR009057Homeodomain-like
SMARTSM003897.6E-14197262IPR001356Homeobox domain
CDDcd000864.93E-13198258No hitNo description
Gene3DG3DSA:1.10.10.606.5E-26200260IPR009057Homeodomain-like
PfamPF059204.0E-16215254IPR008422Homeobox KN domain
PROSITE patternPS000270233256IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEPLYRFKPL LPSRLRTTPN SYLQLEAPQP DVTDSGMTDR IIKIQIANHP LYPDLLSAYL  60
ECQKVGAPPE LACLLEEIGR ESRRMNARLE KGDGPELDHF MEMYCDLLRR YKEELSRPFN  120
EATLFLGNME SQLSNLCNGT LAKSSDNNRS DEVAGGASEE ERSCGEMEEV EGDQNLKEML  180
LRKYSGHFSG LRKEFLKRRK KGKLPKDAKM ALMDWWNTHH RWPYPTEEEK VKLSEVTGLD  240
QKQINNWFIN QRKRHWKPAE DMRFAVMDGL SGGGGVIGGA MFF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G224900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959741e-124BT095974.1 Soybean clone JCVI-FLGm-20M5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163321.10.0hypothetical protein PHAVU_001G224900g
SwissprotQ9FP296e-88KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLV7D1B70.0V7D1B7_PHAVU; Uncharacterized protein
STRINGXP_007163321.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-83KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]