PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.001G204600.1

Common Name

PHAVU_001G204600g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

HB-other

Protein Properties

Length: 1027aa MW: 114152 Da PI: 9.58

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.001G204600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.3	8.4e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + +s++e +e+++ g+t +qV+ +F +R + ++ Phvul.001G204600.1 69 KRPRDLLNPKAVNYMQSIFSIKDSISKKELREISALFGVTATQVRDFFTGQRSRVRR 125 799**************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-5	65	120	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.766	66	126	IPR001356	Homeobox domain
SMART	SM00389	4.6E-4	68	130	IPR001356	Homeobox domain
CDD	cd00086	1.71E-4	69	125	No hit	No description
SuperFamily	SSF46689	2.95E-6	69	131	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	7.5E-5	224	310	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1027 aa Download sequence Send to blast
MDAWNEDFVE QEIGSSAESF QKFLLSQRDL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV NYMQSIFSIK DSISKKELRE ISALFGVTAT QVRDFFTGQR 120 SRVRRLVQFS KERALGSTSC GDPHDDKIIS DPVRLINPAS LNSTVPSSAE EASCSTQDAA 180 LSDLDDSDKH FVDNIFSLMQ KEETFSGQEK LMEWILTIQN SSVLLWFLNR EGGITLATWL 240 NKATVEEQTS VLLLILKVLC HLPLHKAIPM HISAILQSVN KLRFYRASDI SNRARILLSK 300 WSKLLARNQV IKKPNGVRPS SDGHKELISQ SIGQFVGSES WHSNIDVPED FFSLSSECLD 360 NFRKVGSSQA AKLLTPSLDD SSKKSTLGVL SSQSRERRKI QLVEQPGQKS VSRNSQVTRA 420 GPVSQGRPMS ADDIQKAKMR ALFMQSKYGK SGSKESKETK IDSLNKQPQT IPASIAACSS 480 KAPTPYKIDE NKKPLLLASK TSNRLEAYSK PKMDVKEPLW EKCMRVQIPW KRPAEVELKD 540 TWRVGSGENS KEVDAQRNRD RREKETIYKT IQEIPPNPKE PWDLEMDYDD TLTLEIPIEQ 600 LPDGDGADIT VSPNQVAAHT VQGVASTSST SMAPAEPDLE LLAVLLKNPE LVFALTSGQA 660 GSIPSEEIVK LLDMIKRGGA NLGLSENTNG SYGTSVKAPE KVEVSLPSPT PLSDPRTNGW 720 SSEASKNPFS RRSVASDRII QNHAAVATPN LLTQIPVTST TTVRQQPTVV VSSSRHLTST 780 AVSPYSLHQA TNVNPEKQQP VGHVQIPPSN VGLTMKKNLI TTNASSVNFS GTHTTLSMRS 840 NGTNYGNDTN YVKPVHNLSV QHEGLSNSFP QSSFKLPSPT PSNSASHQHV VQEAHYTEPP 900 YRNPSRSYPP QTEKSDHGSE SMWRVRQDVS PSYHSQRNHN NYNAMAGGSR QSGVWDRNNH 960 GREGFESWSP ENSPTRNPRH IPGRNYPESR VNHGRNHRPE WSRERGSSGH WDPGRQVNRK 1020 WHDQRR*

Sequence ? help Back to Top

Protein Sequence Length: 1027 aa Download sequence Send to blast

MDAWNEDFVE QEIGSSAESF QKFLLSQRDL FHSQIDQFQE IVVTQCKLTG VNPLSQEMAA  60
GALSIKIGKR PRDLLNPKAV NYMQSIFSIK DSISKKELRE ISALFGVTAT QVRDFFTGQR  120
SRVRRLVQFS KERALGSTSC GDPHDDKIIS DPVRLINPAS LNSTVPSSAE EASCSTQDAA  180
LSDLDDSDKH FVDNIFSLMQ KEETFSGQEK LMEWILTIQN SSVLLWFLNR EGGITLATWL  240
NKATVEEQTS VLLLILKVLC HLPLHKAIPM HISAILQSVN KLRFYRASDI SNRARILLSK  300
WSKLLARNQV IKKPNGVRPS SDGHKELISQ SIGQFVGSES WHSNIDVPED FFSLSSECLD  360
NFRKVGSSQA AKLLTPSLDD SSKKSTLGVL SSQSRERRKI QLVEQPGQKS VSRNSQVTRA  420
GPVSQGRPMS ADDIQKAKMR ALFMQSKYGK SGSKESKETK IDSLNKQPQT IPASIAACSS  480
KAPTPYKIDE NKKPLLLASK TSNRLEAYSK PKMDVKEPLW EKCMRVQIPW KRPAEVELKD  540
TWRVGSGENS KEVDAQRNRD RREKETIYKT IQEIPPNPKE PWDLEMDYDD TLTLEIPIEQ  600
LPDGDGADIT VSPNQVAAHT VQGVASTSST SMAPAEPDLE LLAVLLKNPE LVFALTSGQA  660
GSIPSEEIVK LLDMIKRGGA NLGLSENTNG SYGTSVKAPE KVEVSLPSPT PLSDPRTNGW  720
SSEASKNPFS RRSVASDRII QNHAAVATPN LLTQIPVTST TTVRQQPTVV VSSSRHLTST  780
AVSPYSLHQA TNVNPEKQQP VGHVQIPPSN VGLTMKKNLI TTNASSVNFS GTHTTLSMRS  840
NGTNYGNDTN YVKPVHNLSV QHEGLSNSFP QSSFKLPSPT PSNSASHQHV VQEAHYTEPP  900
YRNPSRSYPP QTEKSDHGSE SMWRVRQDVS PSYHSQRNHN NYNAMAGGSR QSGVWDRNNH  960
GREGFESWSP ENSPTRNPRH IPGRNYPESR VNHGRNHRPE WSRERGSSGH WDPGRQVNRK  1020
WHDQRR*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.001G204600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ840770	0.0	HQ840770.1 Phaseolus vulgaris clone BAC B1-157 genotype G19833, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007163082.1	0.0	hypothetical protein PHAVU_001G204600g
Swissprot	Q38796	1e-158	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	V7D1K2	0.0	V7D1K2_PHAVU; Uncharacterized protein
STRING	XP_007163082.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-133	HB-other family protein

Link Out ? help Back to Top
Phytozome	Phvul.001G204600.1
Entrez Gene	18642026

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]