PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G202000.1 | ||||||||
Common Name | PHAVU_001G202000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ARF | ||||||||
Protein Properties | Length: 668aa MW: 74519.9 Da PI: 6.8378 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 83.3 | 2.2e-26 | 132 | 233 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f kvltpsd++++g +++pk++a+e+ + + +++ +d++g +W +++iyr++++r++lt+GW+ Fv+a++L +gD+++F Phvul.001G202000.1 132 FSKVLTPSDTSTHGGFSIPKRHADECfrpldmtH-Q-TPAQEILAKDLRGFEWHFRHIYRGQPKRHLLTSGWSTFVNAKKLVAGDSCIFV- 219 88****************************9742.3.33459************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++e +v+++r+ Phvul.001G202000.1 220 -SGESGEVRVGIRRA 233 .449999******97 PP | |||||||
2 | Auxin_resp | 83.7 | 3.9e-28 | 260 | 341 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+s F+v+Y+P++ + eF++++ek++k++ +s+G R++m+ + e+s + r++Gt++g++ +d++rWp+S+Wr+Lk Phvul.001G202000.1 260 ASHAVSTGSLFTVYYHPWTNPFEFIIPLEKYLKSTVPDYSIGARVQMQCDVEESLR-RYAGTIIGTEVIDSIRWPGSEWRCLK 341 789*************************************************9865.67**********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-38 | 127 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-34 | 127 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.55E-22 | 131 | 232 | No hit | No description |
Pfam | PF02362 | 2.9E-24 | 132 | 233 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.606 | 132 | 234 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-24 | 132 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-27 | 260 | 341 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.206 | 568 | 651 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 9.12E-6 | 572 | 643 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MRRRREMEPE PRDGLPRNRG PGDDLYTELW RACAGYSVHV PRVGELVFYF PQGHLEQVAA 60 FTQHQQDGHM EIPASGLPSK ILCRVVYVQL QAEIYTDEVF AQVTLVPEAK QNDFDLENED 120 NHVPLRTATY SFSKVLTPSD TSTHGGFSIP KRHADECFRP LDMTHQTPAQ EILAKDLRGF 180 EWHFRHIYRG QPKRHLLTSG WSTFVNAKKL VAGDSCIFVS GESGEVRVGI RRANRHPSNA 240 SLSSSLISGH SMQLGILASA SHAVSTGSLF TVYYHPWTNP FEFIIPLEKY LKSTVPDYSI 300 GARVQMQCDV EESLRRYAGT IIGTEVIDSI RWPGSEWRCL KVQWDAAVDA FMHPERVCPW 360 WIEPLESATE KHFPVLPNPK RPHLLNQHPL PGLSVFGMND AGQSSARAAS QTQRTDRDLQ 420 GQDYSGLSTS WPLQRPSSSD VINPSKFSIS GSQFGKENLN QLPFHMQDIL HKSLGRSTSL 480 AHEDLSISSS NLGSICSDSL GWPPYESRNE NDAPFGQLGS CSRYKLFGVS LIDRQPELPS 540 SQPSSLRSTP PMSVTSGKTC QKCRSVNRSC TKVIKLGTAL GRAVDLSRFR GYDELIAELD 600 SMFDFGGGLV NGSSGWHVTC IDDDGDMMFL RDYPWQDFQC VVQKMIICQK DGINSLNPRS 660 SADPPSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-118 | 23 | 370 | 17 | 360 | Auxin response factor 1 |
4ldw_A | 1e-118 | 23 | 370 | 17 | 360 | Auxin response factor 1 |
4ldw_B | 1e-118 | 23 | 370 | 17 | 360 | Auxin response factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G202000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-145 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007163052.1 | 0.0 | hypothetical protein PHAVU_001G202000g | ||||
TrEMBL | V7D1H2 | 0.0 | V7D1H2_PHAVU; Auxin response factor | ||||
STRING | XP_007163052.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13105 | 23 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 1e-122 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G202000.1 |
Entrez Gene | 18642000 |