PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G196800.4
Common NamePHAVU_001G196800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YA
Protein Properties Length: 331aa    MW: 36105.7 Da    PI: 9.3698
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G196800.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.31.7e-30161217158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         d p+YVNaKQy++I++RRq+Rak+  ++kl +k rkpy+heSRh hA+rRpRg+gGrF
  Phvul.001G196800.4 161 DGPIYVNAKQYHGIIRRRQSRAKAVLHHKL-TKRRKPYMHESRHLHAMRRPRGCGGRF 217
                         57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.4E-34159220IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.737160220IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.6E-23163185IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.6E-27163217IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.6E-23194217IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAMQTVYLKE HEGNAPNFVG ALSSAASAPW WSAFGSQAVH GGESCVQMKP FSLELPNCID  60
QHAVNKPSAR GAEHVLGKGH TTQFTIFPDD CKMSDEAQTL QTTISLQPSL ADSHSRFEIG  120
FSQPMICAKY PYTDQFYGLF SAYAPQISGR IMLPLNMTSD DGPIYVNAKQ YHGIIRRRQS  180
RAKAVLHHKL TKRRKPYMHE SRHLHAMRRP RGCGGRFLNT RKSANGNGKT GNEVHETVGE  240
RLHSSGSQSS EFLQSEAGTL NSSKETNGSS PNISGSEVTS MYSRGGLERF SLNHFGSSVH  300
TLVDMIDGGR GMIIPTKWAA AAGNCCNLKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A7e-17161218260HAPB protein
4g92_A7e-17161218260HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175194RRRQSRAKAVLHHKLTKRRK
2175195RRRQSRAKAVLHHKLTKRRKP
3176195RRQSRAKAVLHHKLTKRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G196800.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162983.10.0hypothetical protein PHAVU_001G196800g
RefseqXP_007162984.10.0hypothetical protein PHAVU_001G196800g
RefseqXP_007162985.10.0hypothetical protein PHAVU_001G196800g
RefseqXP_007162986.10.0hypothetical protein PHAVU_001G196800g
TrEMBLV7CXQ10.0V7CXQ1_PHAVU; Uncharacterized protein
STRINGXP_007162983.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.23e-54nuclear factor Y, subunit A10