PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G187500.1
Common NamePHAVU_001G187500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRF
Protein Properties Length: 387aa    MW: 41854.5 Da    PI: 7.2975
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G187500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC82.24.7e-26141184144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  Phvul.001G187500.1 141 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 184
                         79***************************************987 PP

2QLQ51.82.4e-1872108137
                 QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         s+F+ +Q+q+L+ Q+l+++y++a++ vPpeLlq+i+k
  Phvul.001G187500.1  72 SYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKK 108
                         78*********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.4E-1072108IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.7E-1373106IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.50773108IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.808141185IPR014977WRC domain
PfamPF088792.3E-22142184IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDLHLKQWRN QHESEEQHST KMPKLLPESH QQPQTQSSAS ALPLFVPEPN SKVSTLSDST  60
LAATNRLPRM GSYFSLSQWQ ELELQALIFR YMLAGAAVPP ELLQPIKKSL LHSPHYFLHH  120
PLQHYQPALL QSGYWGRGAM DPEPGRCRRT DGKKWRCSRD VVAGQKYCER HMHRGRNRSR  180
KPVELPTPSS ANCGGSGGGG GSQGLGASSS ISSPPLATAS LKSPFDLLHL SERSSGTKNE  240
DKSLFENEDH VGGDGRAGGH MLRHFFDDWP RSLEDSDNVE NNAGRMNSAT CLSISMPGNA  300
SSSSDVSLKL STGYGEDPGP RNENLNLEAE QLQLNWAGGW ASGSQVASMG GPLAEALRSS  360
TSTSSPTSVL HHLPPGSGSE TSFISA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G187500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-150AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162865.10.0hypothetical protein PHAVU_001G187500g
SwissprotQ8L8A75e-94GRF4_ARATH; Growth-regulating factor 4
TrEMBLV7CXL50.0V7CXL5_PHAVU; Uncharacterized protein
STRINGXP_007162865.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.19e-83growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]