PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G187500.1 | ||||||||
Common Name | PHAVU_001G187500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | GRF | ||||||||
Protein Properties | Length: 387aa MW: 41854.5 Da PI: 7.2975 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 82.2 | 4.7e-26 | 141 | 184 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e Phvul.001G187500.1 141 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 184 79***************************************987 PP | |||||||
2 | QLQ | 51.8 | 2.4e-18 | 72 | 108 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ +Q+q+L+ Q+l+++y++a++ vPpeLlq+i+k Phvul.001G187500.1 72 SYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKK 108 78*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.4E-10 | 72 | 108 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.7E-13 | 73 | 106 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.507 | 73 | 108 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.808 | 141 | 185 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.3E-22 | 142 | 184 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MDLHLKQWRN QHESEEQHST KMPKLLPESH QQPQTQSSAS ALPLFVPEPN SKVSTLSDST 60 LAATNRLPRM GSYFSLSQWQ ELELQALIFR YMLAGAAVPP ELLQPIKKSL LHSPHYFLHH 120 PLQHYQPALL QSGYWGRGAM DPEPGRCRRT DGKKWRCSRD VVAGQKYCER HMHRGRNRSR 180 KPVELPTPSS ANCGGSGGGG GSQGLGASSS ISSPPLATAS LKSPFDLLHL SERSSGTKNE 240 DKSLFENEDH VGGDGRAGGH MLRHFFDDWP RSLEDSDNVE NNAGRMNSAT CLSISMPGNA 300 SSSSDVSLKL STGYGEDPGP RNENLNLEAE QLQLNWAGGW ASGSQVASMG GPLAEALRSS 360 TSTSSPTSVL HHLPPGSGSE TSFISA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G187500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-150 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007162865.1 | 0.0 | hypothetical protein PHAVU_001G187500g | ||||
Swissprot | Q8L8A7 | 5e-94 | GRF4_ARATH; Growth-regulating factor 4 | ||||
TrEMBL | V7CXL5 | 0.0 | V7CXL5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007162865.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7895 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 9e-83 | growth-regulating factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G187500.1 |
Entrez Gene | 18641848 |
Publications ? help Back to Top | |||
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