PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G186400.1 | ||||||||
Common Name | PHAVU_001G186400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 249aa MW: 27648.6 Da PI: 8.3453 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.7 | 6.2e-23 | 17 | 65 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ +n+sn qvtfskRr+g++KKA+EL++LC+a+va+++fs+ k++ + Phvul.001G186400.1 17 KKMSNESNLQVTFSKRRTGLFKKASELCTLCAADVALVVFSPGEKVFSF 65 5689***************************************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.46 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.9E-32 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.62E-27 | 10 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.90E-33 | 10 | 78 | No hit | No description |
PRINTS | PR00404 | 2.9E-19 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.8E-24 | 19 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-19 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-19 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MSSDTKKSRG RQKIEMKKMS NESNLQVTFS KRRTGLFKKA SELCTLCAAD VALVVFSPGE 60 KVFSFGHPNV DAVTDSYLAR PPPQDMGTMQ FIEAHRLANV CDLNAQLTQI NAQLEAGKQR 120 GEELNRMKKD SQSKQWWVQP IEEMSPAQME QYKASLEELK KLVARLAERA MLESATNQTC 180 QFFPGAPSSS NSSNLLHHPH PPQVFPQPLI QPPMLQNFMF PDGSIVSHHG FNHMEVGGYA 240 PGPAGVFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 3e-15 | 10 | 92 | 2 | 84 | MEF2 CHIMERA |
6bz1_B | 3e-15 | 10 | 92 | 2 | 84 | MEF2 CHIMERA |
6bz1_C | 3e-15 | 10 | 92 | 2 | 84 | MEF2 CHIMERA |
6bz1_D | 3e-15 | 10 | 92 | 2 | 84 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G186400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007162852.1 | 0.0 | hypothetical protein PHAVU_001G186400g | ||||
Swissprot | Q9FKK2 | 6e-60 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | V7D0Z9 | 0.0 | V7D0Z9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007162852.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-61 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G186400.1 |
Entrez Gene | 18641837 |
Publications ? help Back to Top | |||
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