PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G175700.1
Common NamePHAVU_001G175700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family S1Fa-like
Protein Properties Length: 84aa    MW: 9179.87 Da    PI: 10.6282
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G175700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA135.81e-421983670
                S1FA  6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                        +  +G+nPGlivllvvgglll+fl+gn++ly+yaqk+lPPrkkkPvskkk+k+e+lkqGv++PGe
  Phvul.001G175700.1 19 ASNQGFNPGLIVLLVVGGLLLTFLIGNFVLYTYAQKTLPPRKKKPVSKKKMKKERLKQGVSAPGE 83
                        5569************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046893.4E-402083IPR006779DNA binding protein S1FA
ProDomPD0190131.0E-52283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MADDFEFADK VPPSFDRVAS NQGFNPGLIV LLVVGGLLLT FLIGNFVLYT YAQKTLPPRK  60
KKPVSKKKMK KERLKQGVSA PGE*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G175700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150375e-88AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162731.11e-53hypothetical protein PHAVU_001G175700g
SwissprotQ7XLX62e-14S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLV7CZP43e-52V7CZP4_PHAVU; Uncharacterized protein
STRINGXP_007162731.15e-53(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54093355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09735.15e-09S1FA-like DNA-binding protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]