PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.001G161700.1 | ||||||||
Common Name | PHAVU_001G161700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 293aa MW: 33620.5 Da PI: 6.2686 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.5 | 1.6e-50 | 10 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF P+deelv++yL kk++++++ ++ e+d++ +ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++ Phvul.001G161700.1 10 LPPGFRFYPSDEELVCHYLYKKIANEDVLK-GTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRT 99 79************************9655.78***************88888999*********************************** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 v++ ++e+vg++ktLvfy++rap+g kt W+mhe+rle Phvul.001G161700.1 100 VVDPtTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138 ***977888***************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-61 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.532 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-28 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 293 aa Download sequence Send to blast |
MGLRDIGASL PPGFRFYPSD EELVCHYLYK KIANEDVLKG TLVEIDLHIC EPWQLPEVAK 60 LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV VDPTTQEVVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLETP HMPPKEDWVL CRVFHKSKED NNGSKVMYEY DTTPQSLTMA 180 SSSPTNQTMA GGYNRFPTSF TSSMPLPTHH HHHHHFNTNQ NSSFMDLLHF SRDTNTNNTI 240 VTQISSKGDD GYGFLWDMDL EENSLEDGVA SNLDAITFEI DNNHNDNNMV FL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-49 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-49 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-49 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-49 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-48 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-48 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-48 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-48 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-48 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-48 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-48 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-48 | 9 | 157 | 19 | 169 | NAC domain-containing protein 19 |
4dul_A | 8e-49 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-49 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.001G161700.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT089365 | 0.0 | BT089365.1 Soybean clone JCVI-FLGm-1D22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007162552.1 | 0.0 | hypothetical protein PHAVU_001G161700g | ||||
Swissprot | Q84TE6 | 4e-63 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | V7D049 | 0.0 | V7D049_PHAVU; Uncharacterized protein | ||||
STRING | XP_007162552.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4381 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-94 | NAC domain containing protein 74 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.001G161700.1 |
Entrez Gene | 18641583 |