PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G160100.1
Common NamePHAVU_001G160100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 131aa    MW: 14743.8 Da    PI: 7.3883
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G160100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-191868255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +g++++eIrd      ++ +r++lg+f taeeAa+a+++a+ +++g
  Phvul.001G160100.1 18 KYRGVRRRP-WGKFASEIRD----SaRHgARVWLGTFNTAEEAARAYDRAAFEMRG 68
                        8********.**********....33236*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.41E-301877No hitNo description
PROSITE profilePS5103223.8021876IPR001471AP2/ERF domain
SMARTSM003801.4E-361882IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-231878IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-311877IPR001471AP2/ERF domain
PfamPF008478.0E-151868IPR001471AP2/ERF domain
PRINTSPR003678.5E-121930IPR001471AP2/ERF domain
PRINTSPR003678.5E-124258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MEDLKEKVMS EGEAKKIKYR GVRRRPWGKF ASEIRDSARH GARVWLGTFN TAEEAARAYD  60
RAAFEMRGTM AILNFPHEHQ PCNVATLSNK CSSSKTELGK QVVVLECLED KLLEELLDCD  120
DKTINQNLGN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-3314791075Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G160100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150378e-91AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162535.15e-94hypothetical protein PHAVU_001G160100g
SwissprotQ9LTC51e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLV7CWM31e-92V7CWM3_PHAVU; Uncharacterized protein
STRINGXP_007162535.12e-93(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-28ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]