PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G159600.1
Common NamePHAVU_001G159600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 735aa    MW: 81369.9 Da    PI: 6.3948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G159600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000175615981355
                         HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         R+ i +++ eLrel+P+ a      K s  + Le+A++++  Lq
  Phvul.001G159600.1 561 RQLIQDRIKELRELVPNgA------KCSIDSLLERAIKHMLFLQ 598
                         67799************77......777778*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.6E-335167IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00137541598No hitNo description
PROSITE profilePS5088810.925548597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-4561602IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-5561602IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MGTNLHQVLR SLCLNTHWNY AIFWKLKHRA RMILTWEDAY YNNPDDYDSS ENKHCRNIVE  60
QIGCGKFSHN ALGLAVAKMS YHAYSLGEGI VGQVAVTGKH RWICADNQVA GSGLSFEFAD  120
GWQSQFSAGI RTVAVVAVAP LGVVQLGSLN KQVIEDTGFV THIRNLFLST QNYSIAQCPS  180
QMQGSLKSSL SQLDILKENL SSDVMPTGFY NSQKSMKSET SDVLMPLQCS GRNDAPHSAC  240
VKMSDDVAKQ EGPELYSDES SILLQSISNM MNVEHQDFEE MKPLYGRKGE EGSSGCKDVR  300
LESENNVLSF LSDFVTDNDL ICPSEKVKID SAYFPSAFLD TVVCETDKLH YQKGVLNFTQ  360
PSDANSQHVE KSKFCSEPSY KDMSHVLNFP VGCELHEALG PSFLKGSKCF DWPAQVNQDM  420
KTVEMSDEIS QLTSESRPEH LLEAMVANIC HSNNDVNSEL SFCPSMQSAM ASGKNHEAST  480
HNVYAINSEG CSIDQFSLVK EDKHHSLSSS SGICGVMSSK AVSSTFPSSS SGQLERSSEP  540
SKNSKKRARP GESCRPRPRD RQLIQDRIKE LRELVPNGAK CSIDSLLERA IKHMLFLQSI  600
TKHADKLADF GDTKSKLHHM EADILGSSSY EQGSSWAMEV GGHLKVHSVL VENLSKNGQM  660
LVEMLCEECS HFLEIAEAIR SLGLTILKGG TKVHGEKIWI CFVVEGQNNR NVHRLDILWP  720
LVQILQSKSK VHSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G159600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162528.10.0hypothetical protein PHAVU_001G159600g
TrEMBLV7CWG10.0V7CWG1_PHAVU; Uncharacterized protein
STRINGXP_007162528.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50272022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-138conserved peptide upstream open reading frame 7